miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15869 5' -52.5 NC_004065.1 + 43592 0.66 0.995604
Target:  5'- gCGUGGAGGaaGAuGGUCCcgGUGAGGcCCa -3'
miRNA:   3'- aGCAUUUCCg-CU-CUAGG--UACUCCcGG- -5'
15869 5' -52.5 NC_004065.1 + 25001 0.66 0.995604
Target:  5'- gUGUGuGGGCG---UCCGUGggcgcggcaaGGGGCCg -3'
miRNA:   3'- aGCAUuUCCGCucuAGGUAC----------UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 33330 0.66 0.995604
Target:  5'- cUCGaAGAGGCG-GAUCCcGUcGGGGUUc -3'
miRNA:   3'- -AGCaUUUCCGCuCUAGG-UAcUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 182414 0.66 0.995604
Target:  5'- cCGUGucGGCGAuGuAUCgAgaggagGAGGGUCa -3'
miRNA:   3'- aGCAUuuCCGCU-C-UAGgUa-----CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 203636 0.66 0.995604
Target:  5'- --uUGGAGGCGGGGg-CAUGGGGaacGCCc -3'
miRNA:   3'- agcAUUUCCGCUCUagGUACUCC---CGG- -5'
15869 5' -52.5 NC_004065.1 + 145726 0.66 0.994903
Target:  5'- gUCGguggaGGAGGCGGGAgcggUgAUGAGuGcGCCg -3'
miRNA:   3'- -AGCa----UUUCCGCUCUa---GgUACUC-C-CGG- -5'
15869 5' -52.5 NC_004065.1 + 21242 0.66 0.994903
Target:  5'- cCGaAGAGGCGAcAUCgCAUGucGGUCg -3'
miRNA:   3'- aGCaUUUCCGCUcUAG-GUACucCCGG- -5'
15869 5' -52.5 NC_004065.1 + 154603 0.66 0.994903
Target:  5'- cCGUuc-GGCGGGucAUCCGUGAgcucuucggGGGCg -3'
miRNA:   3'- aGCAuuuCCGCUC--UAGGUACU---------CCCGg -5'
15869 5' -52.5 NC_004065.1 + 136402 0.66 0.994115
Target:  5'- gUCGguagccGGgGAGcugGUCC-UGGGGGCCc -3'
miRNA:   3'- -AGCauuu--CCgCUC---UAGGuACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 187655 0.66 0.994115
Target:  5'- aUCaUGucGGCGGGGUCCAc--GGGCa -3'
miRNA:   3'- -AGcAUuuCCGCUCUAGGUacuCCCGg -5'
15869 5' -52.5 NC_004065.1 + 143344 0.66 0.994115
Target:  5'- gCGgcAGGGCGAGGgaaCAcUGGGGGg- -3'
miRNA:   3'- aGCauUUCCGCUCUag-GU-ACUCCCgg -5'
15869 5' -52.5 NC_004065.1 + 143407 0.66 0.994115
Target:  5'- gCGuUGGAGuGUgGAGAUCCGcugcUGAGGGUg -3'
miRNA:   3'- aGC-AUUUC-CG-CUCUAGGU----ACUCCCGg -5'
15869 5' -52.5 NC_004065.1 + 79649 0.66 0.994115
Target:  5'- gCGUGucGGCGcugauGAcCCggGAGGuGCCg -3'
miRNA:   3'- aGCAUuuCCGCu----CUaGGuaCUCC-CGG- -5'
15869 5' -52.5 NC_004065.1 + 18023 0.66 0.99323
Target:  5'- gUCGUAGAGGUcuGGUUCGUc-GGGCUg -3'
miRNA:   3'- -AGCAUUUCCGcuCUAGGUAcuCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 153316 0.66 0.99323
Target:  5'- cCGUAuacaucGGCG-GAUCC-UGgagaAGGGCCu -3'
miRNA:   3'- aGCAUuu----CCGCuCUAGGuAC----UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 67840 0.66 0.993136
Target:  5'- cUCGUGucGaGCGGucguccgauccccGAUCCuccGAGGGCUg -3'
miRNA:   3'- -AGCAUuuC-CGCU-------------CUAGGua-CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 198748 0.66 0.992651
Target:  5'- gUCGUAcGGGUcgGAGGUCCGUccgcacagacccaacGggaucAGGGCCu -3'
miRNA:   3'- -AGCAUuUCCG--CUCUAGGUA---------------C-----UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 211719 0.66 0.992243
Target:  5'- aUCGaGAGGGCGAG-UCCggcucGUGucGGCUu -3'
miRNA:   3'- -AGCaUUUCCGCUCuAGG-----UACucCCGG- -5'
15869 5' -52.5 NC_004065.1 + 96 0.66 0.992243
Target:  5'- gUCGUGAGGGUgcuccuGAGAgugCgAUGAGguGGCUg -3'
miRNA:   3'- -AGCAUUUCCG------CUCUa--GgUACUC--CCGG- -5'
15869 5' -52.5 NC_004065.1 + 197495 0.66 0.992243
Target:  5'- -gGUGGGGGUGuggcuAGGUCUccGAGGGaCCc -3'
miRNA:   3'- agCAUUUCCGC-----UCUAGGuaCUCCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.