Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15869 | 5' | -52.5 | NC_004065.1 | + | 21242 | 0.66 | 0.994903 |
Target: 5'- cCGaAGAGGCGAcAUCgCAUGucGGUCg -3' miRNA: 3'- aGCaUUUCCGCUcUAG-GUACucCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 154603 | 0.66 | 0.994903 |
Target: 5'- cCGUuc-GGCGGGucAUCCGUGAgcucuucggGGGCg -3' miRNA: 3'- aGCAuuuCCGCUC--UAGGUACU---------CCCGg -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 143344 | 0.66 | 0.994115 |
Target: 5'- gCGgcAGGGCGAGGgaaCAcUGGGGGg- -3' miRNA: 3'- aGCauUUCCGCUCUag-GU-ACUCCCgg -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 67840 | 0.66 | 0.993136 |
Target: 5'- cUCGUGucGaGCGGucguccgauccccGAUCCuccGAGGGCUg -3' miRNA: 3'- -AGCAUuuC-CGCU-------------CUAGGua-CUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 79649 | 0.66 | 0.994115 |
Target: 5'- gCGUGucGGCGcugauGAcCCggGAGGuGCCg -3' miRNA: 3'- aGCAUuuCCGCu----CUaGGuaCUCC-CGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 143407 | 0.66 | 0.994115 |
Target: 5'- gCGuUGGAGuGUgGAGAUCCGcugcUGAGGGUg -3' miRNA: 3'- aGC-AUUUC-CG-CUCUAGGU----ACUCCCGg -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 136402 | 0.66 | 0.994115 |
Target: 5'- gUCGguagccGGgGAGcugGUCC-UGGGGGCCc -3' miRNA: 3'- -AGCauuu--CCgCUC---UAGGuACUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 211719 | 0.66 | 0.992243 |
Target: 5'- aUCGaGAGGGCGAG-UCCggcucGUGucGGCUu -3' miRNA: 3'- -AGCaUUUCCGCUCuAGG-----UACucCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 33330 | 0.66 | 0.995604 |
Target: 5'- cUCGaAGAGGCG-GAUCCcGUcGGGGUUc -3' miRNA: 3'- -AGCaUUUCCGCuCUAGG-UAcUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 145726 | 0.66 | 0.994903 |
Target: 5'- gUCGguggaGGAGGCGGGAgcggUgAUGAGuGcGCCg -3' miRNA: 3'- -AGCa----UUUCCGCUCUa---GgUACUC-C-CGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 187655 | 0.66 | 0.994115 |
Target: 5'- aUCaUGucGGCGGGGUCCAc--GGGCa -3' miRNA: 3'- -AGcAUuuCCGCUCUAGGUacuCCCGg -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 153316 | 0.66 | 0.99323 |
Target: 5'- cCGUAuacaucGGCG-GAUCC-UGgagaAGGGCCu -3' miRNA: 3'- aGCAUuu----CCGCuCUAGGuAC----UCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 18023 | 0.66 | 0.99323 |
Target: 5'- gUCGUAGAGGUcuGGUUCGUc-GGGCUg -3' miRNA: 3'- -AGCAUUUCCGcuCUAGGUAcuCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 198748 | 0.66 | 0.992651 |
Target: 5'- gUCGUAcGGGUcgGAGGUCCGUccgcacagacccaacGggaucAGGGCCu -3' miRNA: 3'- -AGCAUuUCCG--CUCUAGGUA---------------C-----UCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 197495 | 0.66 | 0.992243 |
Target: 5'- -gGUGGGGGUGuggcuAGGUCUccGAGGGaCCc -3' miRNA: 3'- agCAUUUCCGC-----UCUAGGuaCUCCC-GG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 96 | 0.66 | 0.992243 |
Target: 5'- gUCGUGAGGGUgcuccuGAGAgugCgAUGAGguGGCUg -3' miRNA: 3'- -AGCAUUUCCG------CUCUa--GgUACUC--CCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 25001 | 0.66 | 0.995604 |
Target: 5'- gUGUGuGGGCG---UCCGUGggcgcggcaaGGGGCCg -3' miRNA: 3'- aGCAUuUCCGCucuAGGUAC----------UCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 182414 | 0.66 | 0.995604 |
Target: 5'- cCGUGucGGCGAuGuAUCgAgaggagGAGGGUCa -3' miRNA: 3'- aGCAUuuCCGCU-C-UAGgUa-----CUCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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