miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15869 5' -52.5 NC_004065.1 + 65826 1.12 0.006555
Target:  5'- cUCGUAAAGGCGAGAUCCAUGAGGGCCc -3'
miRNA:   3'- -AGCAUUUCCGCUCUAGGUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 128383 0.79 0.543497
Target:  5'- uUCGgc--GGCGAGAgccggCUGUGGGGGCCg -3'
miRNA:   3'- -AGCauuuCCGCUCUa----GGUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 57665 0.75 0.753662
Target:  5'- uUCGUucuGGGGagaGAuGAUCCAcugucaggUGAGGGCCg -3'
miRNA:   3'- -AGCAu--UUCCg--CU-CUAGGU--------ACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 176596 0.74 0.785422
Target:  5'- gUCGgucGGGGCGAGAacgacguggggacuaUCCGUGAcGGGUCc -3'
miRNA:   3'- -AGCau-UUCCGCUCU---------------AGGUACU-CCCGG- -5'
15869 5' -52.5 NC_004065.1 + 197936 0.73 0.834154
Target:  5'- uUCGguuuuGGCGAuaacuUCCGUGAGGGUCu -3'
miRNA:   3'- -AGCauuu-CCGCUcu---AGGUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 21511 0.72 0.86557
Target:  5'- gUCGUGAuGGCGGuGGUCCGUGugcgaacguggGGGGUUa -3'
miRNA:   3'- -AGCAUUuCCGCU-CUAGGUAC-----------UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 61600 0.72 0.86557
Target:  5'- aCGUAAcauucGGCGAGAUCCAggucgcacGAcGGGUCg -3'
miRNA:   3'- aGCAUUu----CCGCUCUAGGUa-------CU-CCCGG- -5'
15869 5' -52.5 NC_004065.1 + 224035 0.72 0.87292
Target:  5'- aUCGU--AGGCccGAGggCCAUGAcGGCCg -3'
miRNA:   3'- -AGCAuuUCCG--CUCuaGGUACUcCCGG- -5'
15869 5' -52.5 NC_004065.1 + 168713 0.72 0.886978
Target:  5'- cCGUcGAGuGCGAGGUCgAcGGGGGCg -3'
miRNA:   3'- aGCAuUUC-CGCUCUAGgUaCUCCCGg -5'
15869 5' -52.5 NC_004065.1 + 5395 0.71 0.923723
Target:  5'- -aGUGGA-GCGAGAacaaccCCGUgGAGGGCCg -3'
miRNA:   3'- agCAUUUcCGCUCUa-----GGUA-CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 163084 0.7 0.934101
Target:  5'- aCG-AAcGGCGAGggCCGcaccgagaacUGGGGGCCc -3'
miRNA:   3'- aGCaUUuCCGCUCuaGGU----------ACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 150404 0.7 0.934101
Target:  5'- cUCGcacGAGGCGAuggagacguGAUCCcgGGGGcGCCc -3'
miRNA:   3'- -AGCau-UUCCGCU---------CUAGGuaCUCC-CGG- -5'
15869 5' -52.5 NC_004065.1 + 50677 0.7 0.943538
Target:  5'- cCGUucacGGUGAGGUCCAU--GGGCUg -3'
miRNA:   3'- aGCAuuu-CCGCUCUAGGUAcuCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 46884 0.7 0.943538
Target:  5'- cCGUGAcGGCGAgGAUgCAcggcuggaGGGGGCCg -3'
miRNA:   3'- aGCAUUuCCGCU-CUAgGUa-------CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 146585 0.7 0.947907
Target:  5'- -gGUAAGGGgauCGGGGUggCCAUcGGGGCCg -3'
miRNA:   3'- agCAUUUCC---GCUCUA--GGUAcUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 89850 0.7 0.952046
Target:  5'- gCGUAGGGGCuGAGGUCCAgguUGAaGGaCUg -3'
miRNA:   3'- aGCAUUUCCG-CUCUAGGU---ACUcCC-GG- -5'
15869 5' -52.5 NC_004065.1 + 97165 0.7 0.952046
Target:  5'- cUCGgaGGGGCGGGuUCCAcuucGGGGCUc -3'
miRNA:   3'- -AGCauUUCCGCUCuAGGUac--UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 21969 0.69 0.955959
Target:  5'- gUCGUc--GGCaGGA-CgGUGAGGGCCg -3'
miRNA:   3'- -AGCAuuuCCGcUCUaGgUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 136445 0.69 0.959649
Target:  5'- gUCGgu-AGGCGGGAagC-UGGGGaGCCg -3'
miRNA:   3'- -AGCauuUCCGCUCUagGuACUCC-CGG- -5'
15869 5' -52.5 NC_004065.1 + 179458 0.69 0.966378
Target:  5'- -gGUGcucGAGGaUGGGAg-CGUGGGGGCCa -3'
miRNA:   3'- agCAU---UUCC-GCUCUagGUACUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.