miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15869 5' -52.5 NC_004065.1 + 227856 0.67 0.991144
Target:  5'- gUCGUcuGGGgGAGAUCaCGgacgGGGGGagaCg -3'
miRNA:   3'- -AGCAuuUCCgCUCUAG-GUa---CUCCCg--G- -5'
15869 5' -52.5 NC_004065.1 + 119508 0.67 0.990428
Target:  5'- gUCGUGcgcGGCGAGccugucgacauccuuGUCCG-GGGcGGCCg -3'
miRNA:   3'- -AGCAUuu-CCGCUC---------------UAGGUaCUC-CCGG- -5'
15869 5' -52.5 NC_004065.1 + 82283 0.67 0.989926
Target:  5'- -gGUGuuGGcCGuGGUCUcccUGAGGGCCc -3'
miRNA:   3'- agCAUuuCC-GCuCUAGGu--ACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 115404 0.67 0.988581
Target:  5'- aUCGUccccGGCGGGGUCguagcGAGGGCg -3'
miRNA:   3'- -AGCAuuu-CCGCUCUAGgua--CUCCCGg -5'
15869 5' -52.5 NC_004065.1 + 119717 0.67 0.988581
Target:  5'- cCGgccAGAGcuGCGAGA-CCGUGAcGGCCg -3'
miRNA:   3'- aGCa--UUUC--CGCUCUaGGUACUcCCGG- -5'
15869 5' -52.5 NC_004065.1 + 43764 0.67 0.988581
Target:  5'- aCGUc-AGGCGaAGGUaCCuguucGGGGGCCa -3'
miRNA:   3'- aGCAuuUCCGC-UCUA-GGua---CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 206834 0.67 0.987101
Target:  5'- -----cGGGCGGGAUCgGc-GGGGCCg -3'
miRNA:   3'- agcauuUCCGCUCUAGgUacUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 169145 0.67 0.987101
Target:  5'- aCGUc-GGGCGGGAa-UAcGAGGGCCu -3'
miRNA:   3'- aGCAuuUCCGCUCUagGUaCUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 169323 0.67 0.986629
Target:  5'- gCGUGAcGGGCGcAGcgCCAucaccgucucgcccUGGuGGGCCg -3'
miRNA:   3'- aGCAUU-UCCGC-UCuaGGU--------------ACU-CCCGG- -5'
15869 5' -52.5 NC_004065.1 + 88672 0.67 0.985477
Target:  5'- --uUGAAGGCGGGAugguagaugUCCGUGAGGu-- -3'
miRNA:   3'- agcAUUUCCGCUCU---------AGGUACUCCcgg -5'
15869 5' -52.5 NC_004065.1 + 28709 0.68 0.983701
Target:  5'- cCGgcAGGGCgGAGAUCCuguccgagGAGGaGaCCg -3'
miRNA:   3'- aGCauUUCCG-CUCUAGGua------CUCC-C-GG- -5'
15869 5' -52.5 NC_004065.1 + 195276 0.68 0.983701
Target:  5'- ------cGGCGGGAaaC-UGAGGGCCa -3'
miRNA:   3'- agcauuuCCGCUCUagGuACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 222481 0.68 0.981766
Target:  5'- aCGggGAGGuCGgagcGGAUCgGaaaacUGAGGGCCa -3'
miRNA:   3'- aGCauUUCC-GC----UCUAGgU-----ACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 89758 0.68 0.979663
Target:  5'- aCGUAcGAcGCGGcGUUgAUGAGGGCCa -3'
miRNA:   3'- aGCAU-UUcCGCUcUAGgUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 33216 0.68 0.979663
Target:  5'- gUCGc--GGGCGAGGugUCCGcagacGAGGGUCu -3'
miRNA:   3'- -AGCauuUCCGCUCU--AGGUa----CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 148876 0.68 0.977384
Target:  5'- gCGgcgGGGGGCGAGGgggacgaaacCUcgGAGGGCg -3'
miRNA:   3'- aGCa--UUUCCGCUCUa---------GGuaCUCCCGg -5'
15869 5' -52.5 NC_004065.1 + 25698 0.68 0.974924
Target:  5'- -aGUAGAuGGCGucGUCC--GGGGGCCc -3'
miRNA:   3'- agCAUUU-CCGCucUAGGuaCUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 93582 0.68 0.974667
Target:  5'- aUGUA-GGGCGAGaAUCCuagcuugacggggAUGAgggGGGCCa -3'
miRNA:   3'- aGCAUuUCCGCUC-UAGG-------------UACU---CCCGG- -5'
15869 5' -52.5 NC_004065.1 + 179458 0.69 0.966378
Target:  5'- -gGUGcucGAGGaUGGGAg-CGUGGGGGCCa -3'
miRNA:   3'- agCAU---UUCC-GCUCUagGUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 136445 0.69 0.959649
Target:  5'- gUCGgu-AGGCGGGAagC-UGGGGaGCCg -3'
miRNA:   3'- -AGCauuUCCGCUCUagGuACUCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.