Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15869 | 5' | -52.5 | NC_004065.1 | + | 21969 | 0.69 | 0.955959 |
Target: 5'- gUCGUc--GGCaGGA-CgGUGAGGGCCg -3' miRNA: 3'- -AGCAuuuCCGcUCUaGgUACUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 89850 | 0.7 | 0.952046 |
Target: 5'- gCGUAGGGGCuGAGGUCCAgguUGAaGGaCUg -3' miRNA: 3'- aGCAUUUCCG-CUCUAGGU---ACUcCC-GG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 97165 | 0.7 | 0.952046 |
Target: 5'- cUCGgaGGGGCGGGuUCCAcuucGGGGCUc -3' miRNA: 3'- -AGCauUUCCGCUCuAGGUac--UCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 146585 | 0.7 | 0.947907 |
Target: 5'- -gGUAAGGGgauCGGGGUggCCAUcGGGGCCg -3' miRNA: 3'- agCAUUUCC---GCUCUA--GGUAcUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 46884 | 0.7 | 0.943538 |
Target: 5'- cCGUGAcGGCGAgGAUgCAcggcuggaGGGGGCCg -3' miRNA: 3'- aGCAUUuCCGCU-CUAgGUa-------CUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 50677 | 0.7 | 0.943538 |
Target: 5'- cCGUucacGGUGAGGUCCAU--GGGCUg -3' miRNA: 3'- aGCAuuu-CCGCUCUAGGUAcuCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 163084 | 0.7 | 0.934101 |
Target: 5'- aCG-AAcGGCGAGggCCGcaccgagaacUGGGGGCCc -3' miRNA: 3'- aGCaUUuCCGCUCuaGGU----------ACUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 150404 | 0.7 | 0.934101 |
Target: 5'- cUCGcacGAGGCGAuggagacguGAUCCcgGGGGcGCCc -3' miRNA: 3'- -AGCau-UUCCGCU---------CUAGGuaCUCC-CGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 5395 | 0.71 | 0.923723 |
Target: 5'- -aGUGGA-GCGAGAacaaccCCGUgGAGGGCCg -3' miRNA: 3'- agCAUUUcCGCUCUa-----GGUA-CUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 168713 | 0.72 | 0.886978 |
Target: 5'- cCGUcGAGuGCGAGGUCgAcGGGGGCg -3' miRNA: 3'- aGCAuUUC-CGCUCUAGgUaCUCCCGg -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 224035 | 0.72 | 0.87292 |
Target: 5'- aUCGU--AGGCccGAGggCCAUGAcGGCCg -3' miRNA: 3'- -AGCAuuUCCG--CUCuaGGUACUcCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 61600 | 0.72 | 0.86557 |
Target: 5'- aCGUAAcauucGGCGAGAUCCAggucgcacGAcGGGUCg -3' miRNA: 3'- aGCAUUu----CCGCUCUAGGUa-------CU-CCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 21511 | 0.72 | 0.86557 |
Target: 5'- gUCGUGAuGGCGGuGGUCCGUGugcgaacguggGGGGUUa -3' miRNA: 3'- -AGCAUUuCCGCU-CUAGGUAC-----------UCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 197936 | 0.73 | 0.834154 |
Target: 5'- uUCGguuuuGGCGAuaacuUCCGUGAGGGUCu -3' miRNA: 3'- -AGCauuu-CCGCUcu---AGGUACUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 176596 | 0.74 | 0.785422 |
Target: 5'- gUCGgucGGGGCGAGAacgacguggggacuaUCCGUGAcGGGUCc -3' miRNA: 3'- -AGCau-UUCCGCUCU---------------AGGUACU-CCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 57665 | 0.75 | 0.753662 |
Target: 5'- uUCGUucuGGGGagaGAuGAUCCAcugucaggUGAGGGCCg -3' miRNA: 3'- -AGCAu--UUCCg--CU-CUAGGU--------ACUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 128383 | 0.79 | 0.543497 |
Target: 5'- uUCGgc--GGCGAGAgccggCUGUGGGGGCCg -3' miRNA: 3'- -AGCauuuCCGCUCUa----GGUACUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 65826 | 1.12 | 0.006555 |
Target: 5'- cUCGUAAAGGCGAGAUCCAUGAGGGCCc -3' miRNA: 3'- -AGCAUUUCCGCUCUAGGUACUCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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