miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15869 5' -52.5 NC_004065.1 + 96 0.66 0.992243
Target:  5'- gUCGUGAGGGUgcuccuGAGAgugCgAUGAGguGGCUg -3'
miRNA:   3'- -AGCAUUUCCG------CUCUa--GgUACUC--CCGG- -5'
15869 5' -52.5 NC_004065.1 + 5395 0.71 0.923723
Target:  5'- -aGUGGA-GCGAGAacaaccCCGUgGAGGGCCg -3'
miRNA:   3'- agCAUUUcCGCUCUa-----GGUA-CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 18023 0.66 0.99323
Target:  5'- gUCGUAGAGGUcuGGUUCGUc-GGGCUg -3'
miRNA:   3'- -AGCAUUUCCGcuCUAGGUAcuCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 21242 0.66 0.994903
Target:  5'- cCGaAGAGGCGAcAUCgCAUGucGGUCg -3'
miRNA:   3'- aGCaUUUCCGCUcUAG-GUACucCCGG- -5'
15869 5' -52.5 NC_004065.1 + 21511 0.72 0.86557
Target:  5'- gUCGUGAuGGCGGuGGUCCGUGugcgaacguggGGGGUUa -3'
miRNA:   3'- -AGCAUUuCCGCU-CUAGGUAC-----------UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 21969 0.69 0.955959
Target:  5'- gUCGUc--GGCaGGA-CgGUGAGGGCCg -3'
miRNA:   3'- -AGCAuuuCCGcUCUaGgUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 25001 0.66 0.995604
Target:  5'- gUGUGuGGGCG---UCCGUGggcgcggcaaGGGGCCg -3'
miRNA:   3'- aGCAUuUCCGCucuAGGUAC----------UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 25698 0.68 0.974924
Target:  5'- -aGUAGAuGGCGucGUCC--GGGGGCCc -3'
miRNA:   3'- agCAUUU-CCGCucUAGGuaCUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 28709 0.68 0.983701
Target:  5'- cCGgcAGGGCgGAGAUCCuguccgagGAGGaGaCCg -3'
miRNA:   3'- aGCauUUCCG-CUCUAGGua------CUCC-C-GG- -5'
15869 5' -52.5 NC_004065.1 + 33216 0.68 0.979663
Target:  5'- gUCGc--GGGCGAGGugUCCGcagacGAGGGUCu -3'
miRNA:   3'- -AGCauuUCCGCUCU--AGGUa----CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 33330 0.66 0.995604
Target:  5'- cUCGaAGAGGCG-GAUCCcGUcGGGGUUc -3'
miRNA:   3'- -AGCaUUUCCGCuCUAGG-UAcUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 43592 0.66 0.995604
Target:  5'- gCGUGGAGGaaGAuGGUCCcgGUGAGGcCCa -3'
miRNA:   3'- aGCAUUUCCg-CU-CUAGG--UACUCCcGG- -5'
15869 5' -52.5 NC_004065.1 + 43764 0.67 0.988581
Target:  5'- aCGUc-AGGCGaAGGUaCCuguucGGGGGCCa -3'
miRNA:   3'- aGCAuuUCCGC-UCUA-GGua---CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 46884 0.7 0.943538
Target:  5'- cCGUGAcGGCGAgGAUgCAcggcuggaGGGGGCCg -3'
miRNA:   3'- aGCAUUuCCGCU-CUAgGUa-------CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 50677 0.7 0.943538
Target:  5'- cCGUucacGGUGAGGUCCAU--GGGCUg -3'
miRNA:   3'- aGCAuuu-CCGCUCUAGGUAcuCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 57665 0.75 0.753662
Target:  5'- uUCGUucuGGGGagaGAuGAUCCAcugucaggUGAGGGCCg -3'
miRNA:   3'- -AGCAu--UUCCg--CU-CUAGGU--------ACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 61600 0.72 0.86557
Target:  5'- aCGUAAcauucGGCGAGAUCCAggucgcacGAcGGGUCg -3'
miRNA:   3'- aGCAUUu----CCGCUCUAGGUa-------CU-CCCGG- -5'
15869 5' -52.5 NC_004065.1 + 65826 1.12 0.006555
Target:  5'- cUCGUAAAGGCGAGAUCCAUGAGGGCCc -3'
miRNA:   3'- -AGCAUUUCCGCUCUAGGUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 67840 0.66 0.993136
Target:  5'- cUCGUGucGaGCGGucguccgauccccGAUCCuccGAGGGCUg -3'
miRNA:   3'- -AGCAUuuC-CGCU-------------CUAGGua-CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 79649 0.66 0.994115
Target:  5'- gCGUGucGGCGcugauGAcCCggGAGGuGCCg -3'
miRNA:   3'- aGCAUuuCCGCu----CUaGGuaCUCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.