miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15869 5' -52.5 NC_004065.1 + 82283 0.67 0.989926
Target:  5'- -gGUGuuGGcCGuGGUCUcccUGAGGGCCc -3'
miRNA:   3'- agCAUuuCC-GCuCUAGGu--ACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 88672 0.67 0.985477
Target:  5'- --uUGAAGGCGGGAugguagaugUCCGUGAGGu-- -3'
miRNA:   3'- agcAUUUCCGCUCU---------AGGUACUCCcgg -5'
15869 5' -52.5 NC_004065.1 + 89758 0.68 0.979663
Target:  5'- aCGUAcGAcGCGGcGUUgAUGAGGGCCa -3'
miRNA:   3'- aGCAU-UUcCGCUcUAGgUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 89850 0.7 0.952046
Target:  5'- gCGUAGGGGCuGAGGUCCAgguUGAaGGaCUg -3'
miRNA:   3'- aGCAUUUCCG-CUCUAGGU---ACUcCC-GG- -5'
15869 5' -52.5 NC_004065.1 + 93582 0.68 0.974667
Target:  5'- aUGUA-GGGCGAGaAUCCuagcuugacggggAUGAgggGGGCCa -3'
miRNA:   3'- aGCAUuUCCGCUC-UAGG-------------UACU---CCCGG- -5'
15869 5' -52.5 NC_004065.1 + 97165 0.7 0.952046
Target:  5'- cUCGgaGGGGCGGGuUCCAcuucGGGGCUc -3'
miRNA:   3'- -AGCauUUCCGCUCuAGGUac--UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 115404 0.67 0.988581
Target:  5'- aUCGUccccGGCGGGGUCguagcGAGGGCg -3'
miRNA:   3'- -AGCAuuu-CCGCUCUAGgua--CUCCCGg -5'
15869 5' -52.5 NC_004065.1 + 119508 0.67 0.990428
Target:  5'- gUCGUGcgcGGCGAGccugucgacauccuuGUCCG-GGGcGGCCg -3'
miRNA:   3'- -AGCAUuu-CCGCUC---------------UAGGUaCUC-CCGG- -5'
15869 5' -52.5 NC_004065.1 + 119717 0.67 0.988581
Target:  5'- cCGgccAGAGcuGCGAGA-CCGUGAcGGCCg -3'
miRNA:   3'- aGCa--UUUC--CGCUCUaGGUACUcCCGG- -5'
15869 5' -52.5 NC_004065.1 + 128383 0.79 0.543497
Target:  5'- uUCGgc--GGCGAGAgccggCUGUGGGGGCCg -3'
miRNA:   3'- -AGCauuuCCGCUCUa----GGUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 136402 0.66 0.994115
Target:  5'- gUCGguagccGGgGAGcugGUCC-UGGGGGCCc -3'
miRNA:   3'- -AGCauuu--CCgCUC---UAGGuACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 136445 0.69 0.959649
Target:  5'- gUCGgu-AGGCGGGAagC-UGGGGaGCCg -3'
miRNA:   3'- -AGCauuUCCGCUCUagGuACUCC-CGG- -5'
15869 5' -52.5 NC_004065.1 + 143344 0.66 0.994115
Target:  5'- gCGgcAGGGCGAGGgaaCAcUGGGGGg- -3'
miRNA:   3'- aGCauUUCCGCUCUag-GU-ACUCCCgg -5'
15869 5' -52.5 NC_004065.1 + 143407 0.66 0.994115
Target:  5'- gCGuUGGAGuGUgGAGAUCCGcugcUGAGGGUg -3'
miRNA:   3'- aGC-AUUUC-CG-CUCUAGGU----ACUCCCGg -5'
15869 5' -52.5 NC_004065.1 + 145726 0.66 0.994903
Target:  5'- gUCGguggaGGAGGCGGGAgcggUgAUGAGuGcGCCg -3'
miRNA:   3'- -AGCa----UUUCCGCUCUa---GgUACUC-C-CGG- -5'
15869 5' -52.5 NC_004065.1 + 146585 0.7 0.947907
Target:  5'- -gGUAAGGGgauCGGGGUggCCAUcGGGGCCg -3'
miRNA:   3'- agCAUUUCC---GCUCUA--GGUAcUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 148876 0.68 0.977384
Target:  5'- gCGgcgGGGGGCGAGGgggacgaaacCUcgGAGGGCg -3'
miRNA:   3'- aGCa--UUUCCGCUCUa---------GGuaCUCCCGg -5'
15869 5' -52.5 NC_004065.1 + 150404 0.7 0.934101
Target:  5'- cUCGcacGAGGCGAuggagacguGAUCCcgGGGGcGCCc -3'
miRNA:   3'- -AGCau-UUCCGCU---------CUAGGuaCUCC-CGG- -5'
15869 5' -52.5 NC_004065.1 + 153316 0.66 0.99323
Target:  5'- cCGUAuacaucGGCG-GAUCC-UGgagaAGGGCCu -3'
miRNA:   3'- aGCAUuu----CCGCuCUAGGuAC----UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 154603 0.66 0.994903
Target:  5'- cCGUuc-GGCGGGucAUCCGUGAgcucuucggGGGCg -3'
miRNA:   3'- aGCAuuuCCGCUC--UAGGUACU---------CCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.