miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15869 5' -52.5 NC_004065.1 + 163084 0.7 0.934101
Target:  5'- aCG-AAcGGCGAGggCCGcaccgagaacUGGGGGCCc -3'
miRNA:   3'- aGCaUUuCCGCUCuaGGU----------ACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 168713 0.72 0.886978
Target:  5'- cCGUcGAGuGCGAGGUCgAcGGGGGCg -3'
miRNA:   3'- aGCAuUUC-CGCUCUAGgUaCUCCCGg -5'
15869 5' -52.5 NC_004065.1 + 169145 0.67 0.987101
Target:  5'- aCGUc-GGGCGGGAa-UAcGAGGGCCu -3'
miRNA:   3'- aGCAuuUCCGCUCUagGUaCUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 169323 0.67 0.986629
Target:  5'- gCGUGAcGGGCGcAGcgCCAucaccgucucgcccUGGuGGGCCg -3'
miRNA:   3'- aGCAUU-UCCGC-UCuaGGU--------------ACU-CCCGG- -5'
15869 5' -52.5 NC_004065.1 + 176596 0.74 0.785422
Target:  5'- gUCGgucGGGGCGAGAacgacguggggacuaUCCGUGAcGGGUCc -3'
miRNA:   3'- -AGCau-UUCCGCUCU---------------AGGUACU-CCCGG- -5'
15869 5' -52.5 NC_004065.1 + 179458 0.69 0.966378
Target:  5'- -gGUGcucGAGGaUGGGAg-CGUGGGGGCCa -3'
miRNA:   3'- agCAU---UUCC-GCUCUagGUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 182414 0.66 0.995604
Target:  5'- cCGUGucGGCGAuGuAUCgAgaggagGAGGGUCa -3'
miRNA:   3'- aGCAUuuCCGCU-C-UAGgUa-----CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 187655 0.66 0.994115
Target:  5'- aUCaUGucGGCGGGGUCCAc--GGGCa -3'
miRNA:   3'- -AGcAUuuCCGCUCUAGGUacuCCCGg -5'
15869 5' -52.5 NC_004065.1 + 195276 0.68 0.983701
Target:  5'- ------cGGCGGGAaaC-UGAGGGCCa -3'
miRNA:   3'- agcauuuCCGCUCUagGuACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 197495 0.66 0.992243
Target:  5'- -gGUGGGGGUGuggcuAGGUCUccGAGGGaCCc -3'
miRNA:   3'- agCAUUUCCGC-----UCUAGGuaCUCCC-GG- -5'
15869 5' -52.5 NC_004065.1 + 197936 0.73 0.834154
Target:  5'- uUCGguuuuGGCGAuaacuUCCGUGAGGGUCu -3'
miRNA:   3'- -AGCauuu-CCGCUcu---AGGUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 198748 0.66 0.992651
Target:  5'- gUCGUAcGGGUcgGAGGUCCGUccgcacagacccaacGggaucAGGGCCu -3'
miRNA:   3'- -AGCAUuUCCG--CUCUAGGUA---------------C-----UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 203636 0.66 0.995604
Target:  5'- --uUGGAGGCGGGGg-CAUGGGGaacGCCc -3'
miRNA:   3'- agcAUUUCCGCUCUagGUACUCC---CGG- -5'
15869 5' -52.5 NC_004065.1 + 206834 0.67 0.987101
Target:  5'- -----cGGGCGGGAUCgGc-GGGGCCg -3'
miRNA:   3'- agcauuUCCGCUCUAGgUacUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 211719 0.66 0.992243
Target:  5'- aUCGaGAGGGCGAG-UCCggcucGUGucGGCUu -3'
miRNA:   3'- -AGCaUUUCCGCUCuAGG-----UACucCCGG- -5'
15869 5' -52.5 NC_004065.1 + 222481 0.68 0.981766
Target:  5'- aCGggGAGGuCGgagcGGAUCgGaaaacUGAGGGCCa -3'
miRNA:   3'- aGCauUUCC-GC----UCUAGgU-----ACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 224035 0.72 0.87292
Target:  5'- aUCGU--AGGCccGAGggCCAUGAcGGCCg -3'
miRNA:   3'- -AGCAuuUCCG--CUCuaGGUACUcCCGG- -5'
15869 5' -52.5 NC_004065.1 + 227856 0.67 0.991144
Target:  5'- gUCGUcuGGGgGAGAUCaCGgacgGGGGGagaCg -3'
miRNA:   3'- -AGCAuuUCCgCUCUAG-GUa---CUCCCg--G- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.