Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15869 | 5' | -52.5 | NC_004065.1 | + | 150404 | 0.7 | 0.934101 |
Target: 5'- cUCGcacGAGGCGAuggagacguGAUCCcgGGGGcGCCc -3' miRNA: 3'- -AGCau-UUCCGCU---------CUAGGuaCUCC-CGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 148876 | 0.68 | 0.977384 |
Target: 5'- gCGgcgGGGGGCGAGGgggacgaaacCUcgGAGGGCg -3' miRNA: 3'- aGCa--UUUCCGCUCUa---------GGuaCUCCCGg -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 146585 | 0.7 | 0.947907 |
Target: 5'- -gGUAAGGGgauCGGGGUggCCAUcGGGGCCg -3' miRNA: 3'- agCAUUUCC---GCUCUA--GGUAcUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 145726 | 0.66 | 0.994903 |
Target: 5'- gUCGguggaGGAGGCGGGAgcggUgAUGAGuGcGCCg -3' miRNA: 3'- -AGCa----UUUCCGCUCUa---GgUACUC-C-CGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 143407 | 0.66 | 0.994115 |
Target: 5'- gCGuUGGAGuGUgGAGAUCCGcugcUGAGGGUg -3' miRNA: 3'- aGC-AUUUC-CG-CUCUAGGU----ACUCCCGg -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 143344 | 0.66 | 0.994115 |
Target: 5'- gCGgcAGGGCGAGGgaaCAcUGGGGGg- -3' miRNA: 3'- aGCauUUCCGCUCUag-GU-ACUCCCgg -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 136445 | 0.69 | 0.959649 |
Target: 5'- gUCGgu-AGGCGGGAagC-UGGGGaGCCg -3' miRNA: 3'- -AGCauuUCCGCUCUagGuACUCC-CGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 136402 | 0.66 | 0.994115 |
Target: 5'- gUCGguagccGGgGAGcugGUCC-UGGGGGCCc -3' miRNA: 3'- -AGCauuu--CCgCUC---UAGGuACUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 128383 | 0.79 | 0.543497 |
Target: 5'- uUCGgc--GGCGAGAgccggCUGUGGGGGCCg -3' miRNA: 3'- -AGCauuuCCGCUCUa----GGUACUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 119717 | 0.67 | 0.988581 |
Target: 5'- cCGgccAGAGcuGCGAGA-CCGUGAcGGCCg -3' miRNA: 3'- aGCa--UUUC--CGCUCUaGGUACUcCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 119508 | 0.67 | 0.990428 |
Target: 5'- gUCGUGcgcGGCGAGccugucgacauccuuGUCCG-GGGcGGCCg -3' miRNA: 3'- -AGCAUuu-CCGCUC---------------UAGGUaCUC-CCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 115404 | 0.67 | 0.988581 |
Target: 5'- aUCGUccccGGCGGGGUCguagcGAGGGCg -3' miRNA: 3'- -AGCAuuu-CCGCUCUAGgua--CUCCCGg -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 97165 | 0.7 | 0.952046 |
Target: 5'- cUCGgaGGGGCGGGuUCCAcuucGGGGCUc -3' miRNA: 3'- -AGCauUUCCGCUCuAGGUac--UCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 93582 | 0.68 | 0.974667 |
Target: 5'- aUGUA-GGGCGAGaAUCCuagcuugacggggAUGAgggGGGCCa -3' miRNA: 3'- aGCAUuUCCGCUC-UAGG-------------UACU---CCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 89850 | 0.7 | 0.952046 |
Target: 5'- gCGUAGGGGCuGAGGUCCAgguUGAaGGaCUg -3' miRNA: 3'- aGCAUUUCCG-CUCUAGGU---ACUcCC-GG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 89758 | 0.68 | 0.979663 |
Target: 5'- aCGUAcGAcGCGGcGUUgAUGAGGGCCa -3' miRNA: 3'- aGCAU-UUcCGCUcUAGgUACUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 88672 | 0.67 | 0.985477 |
Target: 5'- --uUGAAGGCGGGAugguagaugUCCGUGAGGu-- -3' miRNA: 3'- agcAUUUCCGCUCU---------AGGUACUCCcgg -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 82283 | 0.67 | 0.989926 |
Target: 5'- -gGUGuuGGcCGuGGUCUcccUGAGGGCCc -3' miRNA: 3'- agCAUuuCC-GCuCUAGGu--ACUCCCGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 79649 | 0.66 | 0.994115 |
Target: 5'- gCGUGucGGCGcugauGAcCCggGAGGuGCCg -3' miRNA: 3'- aGCAUuuCCGCu----CUaGGuaCUCC-CGG- -5' |
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15869 | 5' | -52.5 | NC_004065.1 | + | 67840 | 0.66 | 0.993136 |
Target: 5'- cUCGUGucGaGCGGucguccgauccccGAUCCuccGAGGGCUg -3' miRNA: 3'- -AGCAUuuC-CGCU-------------CUAGGua-CUCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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