miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15869 5' -52.5 NC_004065.1 + 187655 0.66 0.994115
Target:  5'- aUCaUGucGGCGGGGUCCAc--GGGCa -3'
miRNA:   3'- -AGcAUuuCCGCUCUAGGUacuCCCGg -5'
15869 5' -52.5 NC_004065.1 + 222481 0.68 0.981766
Target:  5'- aCGggGAGGuCGgagcGGAUCgGaaaacUGAGGGCCa -3'
miRNA:   3'- aGCauUUCC-GC----UCUAGgU-----ACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 195276 0.68 0.983701
Target:  5'- ------cGGCGGGAaaC-UGAGGGCCa -3'
miRNA:   3'- agcauuuCCGCUCUagGuACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 227856 0.67 0.991144
Target:  5'- gUCGUcuGGGgGAGAUCaCGgacgGGGGGagaCg -3'
miRNA:   3'- -AGCAuuUCCgCUCUAG-GUa---CUCCCg--G- -5'
15869 5' -52.5 NC_004065.1 + 96 0.66 0.992243
Target:  5'- gUCGUGAGGGUgcuccuGAGAgugCgAUGAGguGGCUg -3'
miRNA:   3'- -AGCAUUUCCG------CUCUa--GgUACUC--CCGG- -5'
15869 5' -52.5 NC_004065.1 + 197495 0.66 0.992243
Target:  5'- -gGUGGGGGUGuggcuAGGUCUccGAGGGaCCc -3'
miRNA:   3'- agCAUUUCCGC-----UCUAGGuaCUCCC-GG- -5'
15869 5' -52.5 NC_004065.1 + 198748 0.66 0.992651
Target:  5'- gUCGUAcGGGUcgGAGGUCCGUccgcacagacccaacGggaucAGGGCCu -3'
miRNA:   3'- -AGCAUuUCCG--CUCUAGGUA---------------C-----UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 18023 0.66 0.99323
Target:  5'- gUCGUAGAGGUcuGGUUCGUc-GGGCUg -3'
miRNA:   3'- -AGCAUUUCCGcuCUAGGUAcuCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 153316 0.66 0.99323
Target:  5'- cCGUAuacaucGGCG-GAUCC-UGgagaAGGGCCu -3'
miRNA:   3'- aGCAUuu----CCGCuCUAGGuAC----UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 89758 0.68 0.979663
Target:  5'- aCGUAcGAcGCGGcGUUgAUGAGGGCCa -3'
miRNA:   3'- aGCAU-UUcCGCUcUAGgUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 33216 0.68 0.979663
Target:  5'- gUCGc--GGGCGAGGugUCCGcagacGAGGGUCu -3'
miRNA:   3'- -AGCauuUCCGCUCU--AGGUa----CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 25698 0.68 0.974924
Target:  5'- -aGUAGAuGGCGucGUCC--GGGGGCCc -3'
miRNA:   3'- agCAUUU-CCGCucUAGGuaCUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 61600 0.72 0.86557
Target:  5'- aCGUAAcauucGGCGAGAUCCAggucgcacGAcGGGUCg -3'
miRNA:   3'- aGCAUUu----CCGCUCUAGGUa-------CU-CCCGG- -5'
15869 5' -52.5 NC_004065.1 + 224035 0.72 0.87292
Target:  5'- aUCGU--AGGCccGAGggCCAUGAcGGCCg -3'
miRNA:   3'- -AGCAuuUCCG--CUCuaGGUACUcCCGG- -5'
15869 5' -52.5 NC_004065.1 + 163084 0.7 0.934101
Target:  5'- aCG-AAcGGCGAGggCCGcaccgagaacUGGGGGCCc -3'
miRNA:   3'- aGCaUUuCCGCUCuaGGU----------ACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 46884 0.7 0.943538
Target:  5'- cCGUGAcGGCGAgGAUgCAcggcuggaGGGGGCCg -3'
miRNA:   3'- aGCAUUuCCGCU-CUAgGUa-------CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 50677 0.7 0.943538
Target:  5'- cCGUucacGGUGAGGUCCAU--GGGCUg -3'
miRNA:   3'- aGCAuuu-CCGCUCUAGGUAcuCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 89850 0.7 0.952046
Target:  5'- gCGUAGGGGCuGAGGUCCAgguUGAaGGaCUg -3'
miRNA:   3'- aGCAUUUCCG-CUCUAGGU---ACUcCC-GG- -5'
15869 5' -52.5 NC_004065.1 + 97165 0.7 0.952046
Target:  5'- cUCGgaGGGGCGGGuUCCAcuucGGGGCUc -3'
miRNA:   3'- -AGCauUUCCGCUCuAGGUac--UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 21969 0.69 0.955959
Target:  5'- gUCGUc--GGCaGGA-CgGUGAGGGCCg -3'
miRNA:   3'- -AGCAuuuCCGcUCUaGgUACUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.