miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15869 5' -52.5 NC_004065.1 + 97165 0.7 0.952046
Target:  5'- cUCGgaGGGGCGGGuUCCAcuucGGGGCUc -3'
miRNA:   3'- -AGCauUUCCGCUCuAGGUac--UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 21969 0.69 0.955959
Target:  5'- gUCGUc--GGCaGGA-CgGUGAGGGCCg -3'
miRNA:   3'- -AGCAuuuCCGcUCUaGgUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 25698 0.68 0.974924
Target:  5'- -aGUAGAuGGCGucGUCC--GGGGGCCc -3'
miRNA:   3'- agCAUUU-CCGCucUAGGuaCUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 33216 0.68 0.979663
Target:  5'- gUCGc--GGGCGAGGugUCCGcagacGAGGGUCu -3'
miRNA:   3'- -AGCauuUCCGCUCU--AGGUa----CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 136445 0.69 0.959649
Target:  5'- gUCGgu-AGGCGGGAagC-UGGGGaGCCg -3'
miRNA:   3'- -AGCauuUCCGCUCUagGuACUCC-CGG- -5'
15869 5' -52.5 NC_004065.1 + 179458 0.69 0.966378
Target:  5'- -gGUGcucGAGGaUGGGAg-CGUGGGGGCCa -3'
miRNA:   3'- agCAU---UUCC-GCUCUagGUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 93582 0.68 0.974667
Target:  5'- aUGUA-GGGCGAGaAUCCuagcuugacggggAUGAgggGGGCCa -3'
miRNA:   3'- aGCAUuUCCGCUC-UAGG-------------UACU---CCCGG- -5'
15869 5' -52.5 NC_004065.1 + 148876 0.68 0.977384
Target:  5'- gCGgcgGGGGGCGAGGgggacgaaacCUcgGAGGGCg -3'
miRNA:   3'- aGCa--UUUCCGCUCUa---------GGuaCUCCCGg -5'
15869 5' -52.5 NC_004065.1 + 28709 0.68 0.983701
Target:  5'- cCGgcAGGGCgGAGAUCCuguccgagGAGGaGaCCg -3'
miRNA:   3'- aGCauUUCCG-CUCUAGGua------CUCC-C-GG- -5'
15869 5' -52.5 NC_004065.1 + 88672 0.67 0.985477
Target:  5'- --uUGAAGGCGGGAugguagaugUCCGUGAGGu-- -3'
miRNA:   3'- agcAUUUCCGCUCU---------AGGUACUCCcgg -5'
15869 5' -52.5 NC_004065.1 + 169323 0.67 0.986629
Target:  5'- gCGUGAcGGGCGcAGcgCCAucaccgucucgcccUGGuGGGCCg -3'
miRNA:   3'- aGCAUU-UCCGC-UCuaGGU--------------ACU-CCCGG- -5'
15869 5' -52.5 NC_004065.1 + 146585 0.7 0.947907
Target:  5'- -gGUAAGGGgauCGGGGUggCCAUcGGGGCCg -3'
miRNA:   3'- agCAUUUCC---GCUCUA--GGUAcUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 150404 0.7 0.934101
Target:  5'- cUCGcacGAGGCGAuggagacguGAUCCcgGGGGcGCCc -3'
miRNA:   3'- -AGCau-UUCCGCU---------CUAGGuaCUCC-CGG- -5'
15869 5' -52.5 NC_004065.1 + 5395 0.71 0.923723
Target:  5'- -aGUGGA-GCGAGAacaaccCCGUgGAGGGCCg -3'
miRNA:   3'- agCAUUUcCGCUCUa-----GGUA-CUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 168713 0.72 0.886978
Target:  5'- cCGUcGAGuGCGAGGUCgAcGGGGGCg -3'
miRNA:   3'- aGCAuUUC-CGCUCUAGgUaCUCCCGg -5'
15869 5' -52.5 NC_004065.1 + 21511 0.72 0.86557
Target:  5'- gUCGUGAuGGCGGuGGUCCGUGugcgaacguggGGGGUUa -3'
miRNA:   3'- -AGCAUUuCCGCU-CUAGGUAC-----------UCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 197936 0.73 0.834154
Target:  5'- uUCGguuuuGGCGAuaacuUCCGUGAGGGUCu -3'
miRNA:   3'- -AGCauuu-CCGCUcu---AGGUACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 176596 0.74 0.785422
Target:  5'- gUCGgucGGGGCGAGAacgacguggggacuaUCCGUGAcGGGUCc -3'
miRNA:   3'- -AGCau-UUCCGCUCU---------------AGGUACU-CCCGG- -5'
15869 5' -52.5 NC_004065.1 + 57665 0.75 0.753662
Target:  5'- uUCGUucuGGGGagaGAuGAUCCAcugucaggUGAGGGCCg -3'
miRNA:   3'- -AGCAu--UUCCg--CU-CUAGGU--------ACUCCCGG- -5'
15869 5' -52.5 NC_004065.1 + 182414 0.66 0.995604
Target:  5'- cCGUGucGGCGAuGuAUCgAgaggagGAGGGUCa -3'
miRNA:   3'- aGCAUuuCCGCU-C-UAGgUa-----CUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.