miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1587 5' -48.5 NC_001347.2 + 229026 0.66 0.999904
Target:  5'- aCGUGUguugGGCGucuGGGUGAa-GCGGCg -3'
miRNA:   3'- aGUACAaa--CUGCu--CCUACUgcUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 7821 0.66 0.999904
Target:  5'- aCGUGgcgUGACGAagcuGGuacgGUGGCGGCGGa -3'
miRNA:   3'- aGUACaa-ACUGCU----CC----UACUGCUGCUg -5'
1587 5' -48.5 NC_001347.2 + 151967 0.66 0.999904
Target:  5'- -gAUGgcacgGACGAcGAcgcUGACGGCGGCg -3'
miRNA:   3'- agUACaaa--CUGCUcCU---ACUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 182427 0.67 0.99984
Target:  5'- uUCGUGUggaUGACGAcc-UGGCaGACGGCa -3'
miRNA:   3'- -AGUACAa--ACUGCUccuACUG-CUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 1969 0.67 0.99984
Target:  5'- -------cGACGGGGAcGGCGGCGGg -3'
miRNA:   3'- aguacaaaCUGCUCCUaCUGCUGCUg -5'
1587 5' -48.5 NC_001347.2 + 142560 0.67 0.99984
Target:  5'- -------aGACGAGGcUGGCGGCGuCg -3'
miRNA:   3'- aguacaaaCUGCUCCuACUGCUGCuG- -5'
1587 5' -48.5 NC_001347.2 + 108956 0.67 0.99984
Target:  5'- aCGUGgaa---GAGGAccUGACGAUGACc -3'
miRNA:   3'- aGUACaaacugCUCCU--ACUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 155504 0.67 0.999795
Target:  5'- -------cGACGugcAGGAUGACGugGAUu -3'
miRNA:   3'- aguacaaaCUGC---UCCUACUGCugCUG- -5'
1587 5' -48.5 NC_001347.2 + 47814 0.67 0.999795
Target:  5'- aCAUGaUUUGGgGGGGAccGGCGGCG-Ca -3'
miRNA:   3'- aGUAC-AAACUgCUCCUa-CUGCUGCuG- -5'
1587 5' -48.5 NC_001347.2 + 170654 0.67 0.999795
Target:  5'- ------cUGGCGAGGA-GACGGCG-Cg -3'
miRNA:   3'- aguacaaACUGCUCCUaCUGCUGCuG- -5'
1587 5' -48.5 NC_001347.2 + 39510 0.67 0.99974
Target:  5'- cCAaGg--GGCGGGGGgcGCGGCGACa -3'
miRNA:   3'- aGUaCaaaCUGCUCCUacUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 197552 0.67 0.99974
Target:  5'- gCGUGgccGGCGuGGcgGcCGACGGCa -3'
miRNA:   3'- aGUACaaaCUGCuCCuaCuGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 185286 0.67 0.99974
Target:  5'- cUCggGUggUGAUGAuGAaguucaUGACGACGACg -3'
miRNA:   3'- -AGuaCAa-ACUGCUcCU------ACUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 206 0.67 0.999591
Target:  5'- -gGUGUggUGGCGGGGuGUGuCGGCGGu -3'
miRNA:   3'- agUACAa-ACUGCUCC-UACuGCUGCUg -5'
1587 5' -48.5 NC_001347.2 + 229685 0.67 0.999591
Target:  5'- -gGUGUggUGGCGGGGuGUGuCGGCGGu -3'
miRNA:   3'- agUACAa-ACUGCUCC-UACuGCUGCUg -5'
1587 5' -48.5 NC_001347.2 + 66788 0.67 0.999591
Target:  5'- -------cGACGGuGGUGGCGGCGGCg -3'
miRNA:   3'- aguacaaaCUGCUcCUACUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 170051 0.67 0.999591
Target:  5'- gCggGUUUuACGAGuGGUGGCGGCGuCg -3'
miRNA:   3'- aGuaCAAAcUGCUC-CUACUGCUGCuG- -5'
1587 5' -48.5 NC_001347.2 + 85923 0.68 0.999226
Target:  5'- cUCGUGUUUGAuacCGAacuGGAUGccCGGCGAg -3'
miRNA:   3'- -AGUACAAACU---GCU---CCUACu-GCUGCUg -5'
1587 5' -48.5 NC_001347.2 + 112465 0.68 0.999055
Target:  5'- cUCAaGUcuucgucCGAGGAcGACGACGACg -3'
miRNA:   3'- -AGUaCAaacu---GCUCCUaCUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 77315 0.68 0.999055
Target:  5'- gCGUGggccgcGGCGuGGAUGACGAggccgucauCGACa -3'
miRNA:   3'- aGUACaaa---CUGCuCCUACUGCU---------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.