Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1587 | 5' | -48.5 | NC_001347.2 | + | 181401 | 1.12 | 0.015557 |
Target: 5'- aUCAUGUUUGACGAGGAUGACGACGACg -3' miRNA: 3'- -AGUACAAACUGCUCCUACUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 131696 | 0.79 | 0.793239 |
Target: 5'- aCAUGUacaacauuugagGACGAGGA-GACGACGACc -3' miRNA: 3'- aGUACAaa----------CUGCUCCUaCUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 125037 | 0.74 | 0.964278 |
Target: 5'- --cUGUUgcacgGGCucGGGUGACGGCGACa -3' miRNA: 3'- aguACAAa----CUGcuCCUACUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 105063 | 0.73 | 0.969997 |
Target: 5'- cUCGUGaggccguccggUGAgGAGGAcGGCGACGACc -3' miRNA: 3'- -AGUACaa---------ACUgCUCCUaCUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 12138 | 0.72 | 0.978496 |
Target: 5'- uUC-UGag-GACGAGGAcucgGACGAUGACg -3' miRNA: 3'- -AGuACaaaCUGCUCCUa---CUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 39939 | 0.72 | 0.978496 |
Target: 5'- gCGUGUgguGCgGAGGAcGGCGACGGCg -3' miRNA: 3'- aGUACAaacUG-CUCCUaCUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 95423 | 0.72 | 0.978496 |
Target: 5'- uUCAUGgcggcugUGGCGGGucgcGACGACGACa -3' miRNA: 3'- -AGUACaa-----ACUGCUCcua-CUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 188383 | 0.72 | 0.982812 |
Target: 5'- ---aGUgccGAUGAGGAcGACGACGAUg -3' miRNA: 3'- aguaCAaa-CUGCUCCUaCUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 111405 | 0.72 | 0.980744 |
Target: 5'- cCAUGUUUGccggcuuCGAGGAaGccaGCGGCGACg -3' miRNA: 3'- aGUACAAACu------GCUCCUaC---UGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 109374 | 0.72 | 0.982812 |
Target: 5'- -------cGACGAGGGUGccgcccaggGCGACGACg -3' miRNA: 3'- aguacaaaCUGCUCCUAC---------UGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 178015 | 0.72 | 0.982812 |
Target: 5'- aUCAUGagccugcugGACGAGGccgaGUGGCGACaGACg -3' miRNA: 3'- -AGUACaaa------CUGCUCC----UACUGCUG-CUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 17221 | 0.71 | 0.992342 |
Target: 5'- --uUGgcgGACGAugaggagcagggagaGGAUGAUGACGACa -3' miRNA: 3'- aguACaaaCUGCU---------------CCUACUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 66683 | 0.71 | 0.990744 |
Target: 5'- -------aGAgGAGGAgGACGACGACg -3' miRNA: 3'- aguacaaaCUgCUCCUaCUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 63059 | 0.7 | 0.993892 |
Target: 5'- gUCAUGggUGGCgGAGGAcUGcCGGCGGg -3' miRNA: 3'- -AGUACaaACUG-CUCCU-ACuGCUGCUg -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 106697 | 0.7 | 0.995464 |
Target: 5'- -------gGACGAGGAUGACcgcaACGACg -3' miRNA: 3'- aguacaaaCUGCUCCUACUGc---UGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 192050 | 0.7 | 0.993892 |
Target: 5'- -------cGACGAcGGUGGCGGCGACg -3' miRNA: 3'- aguacaaaCUGCUcCUACUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 189242 | 0.7 | 0.994725 |
Target: 5'- -------cGAgGAGGAaGACGACGACu -3' miRNA: 3'- aguacaaaCUgCUCCUaCUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 21444 | 0.69 | 0.998332 |
Target: 5'- cUAUGcga-GCGGGGAcggGACGACGACc -3' miRNA: 3'- aGUACaaacUGCUCCUa--CUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 40096 | 0.68 | 0.998852 |
Target: 5'- cCcgGg--GGCGAGG--GACGACGGCc -3' miRNA: 3'- aGuaCaaaCUGCUCCuaCUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 112465 | 0.68 | 0.999055 |
Target: 5'- cUCAaGUcuucgucCGAGGAcGACGACGACg -3' miRNA: 3'- -AGUaCAaacu---GCUCCUaCUGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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