Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1587 | 5' | -48.5 | NC_001347.2 | + | 77315 | 0.68 | 0.999055 |
Target: 5'- gCGUGggccgcGGCGuGGAUGACGAggccgucauCGACa -3' miRNA: 3'- aGUACaaa---CUGCuCCUACUGCU---------GCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 112465 | 0.68 | 0.999055 |
Target: 5'- cUCAaGUcuucgucCGAGGAcGACGACGACg -3' miRNA: 3'- -AGUaCAaacu---GCUCCUaCUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 135065 | 0.68 | 0.999055 |
Target: 5'- aUCGUGUggggacggugaUUGugGAGGGgcguacUGACGACa-- -3' miRNA: 3'- -AGUACA-----------AACugCUCCU------ACUGCUGcug -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 85923 | 0.68 | 0.999226 |
Target: 5'- cUCGUGUUUGAuacCGAacuGGAUGccCGGCGAg -3' miRNA: 3'- -AGUACAAACU---GCU---CCUACu-GCUGCUg -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 170051 | 0.67 | 0.999591 |
Target: 5'- gCggGUUUuACGAGuGGUGGCGGCGuCg -3' miRNA: 3'- aGuaCAAAcUGCUC-CUACUGCUGCuG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 66788 | 0.67 | 0.999591 |
Target: 5'- -------cGACGGuGGUGGCGGCGGCg -3' miRNA: 3'- aguacaaaCUGCUcCUACUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 229685 | 0.67 | 0.999591 |
Target: 5'- -gGUGUggUGGCGGGGuGUGuCGGCGGu -3' miRNA: 3'- agUACAa-ACUGCUCC-UACuGCUGCUg -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 206 | 0.67 | 0.999591 |
Target: 5'- -gGUGUggUGGCGGGGuGUGuCGGCGGu -3' miRNA: 3'- agUACAa-ACUGCUCC-UACuGCUGCUg -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 185286 | 0.67 | 0.99974 |
Target: 5'- cUCggGUggUGAUGAuGAaguucaUGACGACGACg -3' miRNA: 3'- -AGuaCAa-ACUGCUcCU------ACUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 197552 | 0.67 | 0.99974 |
Target: 5'- gCGUGgccGGCGuGGcgGcCGACGGCa -3' miRNA: 3'- aGUACaaaCUGCuCCuaCuGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 39510 | 0.67 | 0.99974 |
Target: 5'- cCAaGg--GGCGGGGGgcGCGGCGACa -3' miRNA: 3'- aGUaCaaaCUGCUCCUacUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 170654 | 0.67 | 0.999795 |
Target: 5'- ------cUGGCGAGGA-GACGGCG-Cg -3' miRNA: 3'- aguacaaACUGCUCCUaCUGCUGCuG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 47814 | 0.67 | 0.999795 |
Target: 5'- aCAUGaUUUGGgGGGGAccGGCGGCG-Ca -3' miRNA: 3'- aGUAC-AAACUgCUCCUa-CUGCUGCuG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 155504 | 0.67 | 0.999795 |
Target: 5'- -------cGACGugcAGGAUGACGugGAUu -3' miRNA: 3'- aguacaaaCUGC---UCCUACUGCugCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 108956 | 0.67 | 0.99984 |
Target: 5'- aCGUGgaa---GAGGAccUGACGAUGACc -3' miRNA: 3'- aGUACaaacugCUCCU--ACUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 142560 | 0.67 | 0.99984 |
Target: 5'- -------aGACGAGGcUGGCGGCGuCg -3' miRNA: 3'- aguacaaaCUGCUCCuACUGCUGCuG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 1969 | 0.67 | 0.99984 |
Target: 5'- -------cGACGGGGAcGGCGGCGGg -3' miRNA: 3'- aguacaaaCUGCUCCUaCUGCUGCUg -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 182427 | 0.67 | 0.99984 |
Target: 5'- uUCGUGUggaUGACGAcc-UGGCaGACGGCa -3' miRNA: 3'- -AGUACAa--ACUGCUccuACUG-CUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 229026 | 0.66 | 0.999904 |
Target: 5'- aCGUGUguugGGCGucuGGGUGAa-GCGGCg -3' miRNA: 3'- aGUACAaa--CUGCu--CCUACUgcUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 151967 | 0.66 | 0.999904 |
Target: 5'- -gAUGgcacgGACGAcGAcgcUGACGGCGGCg -3' miRNA: 3'- agUACaaa--CUGCUcCU---ACUGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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