miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1587 5' -48.5 NC_001347.2 + 206 0.67 0.999591
Target:  5'- -gGUGUggUGGCGGGGuGUGuCGGCGGu -3'
miRNA:   3'- agUACAa-ACUGCUCC-UACuGCUGCUg -5'
1587 5' -48.5 NC_001347.2 + 1969 0.67 0.99984
Target:  5'- -------cGACGGGGAcGGCGGCGGg -3'
miRNA:   3'- aguacaaaCUGCUCCUaCUGCUGCUg -5'
1587 5' -48.5 NC_001347.2 + 7821 0.66 0.999904
Target:  5'- aCGUGgcgUGACGAagcuGGuacgGUGGCGGCGGa -3'
miRNA:   3'- aGUACaa-ACUGCU----CC----UACUGCUGCUg -5'
1587 5' -48.5 NC_001347.2 + 12138 0.72 0.978496
Target:  5'- uUC-UGag-GACGAGGAcucgGACGAUGACg -3'
miRNA:   3'- -AGuACaaaCUGCUCCUa---CUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 17221 0.71 0.992342
Target:  5'- --uUGgcgGACGAugaggagcagggagaGGAUGAUGACGACa -3'
miRNA:   3'- aguACaaaCUGCU---------------CCUACUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 21444 0.69 0.998332
Target:  5'- cUAUGcga-GCGGGGAcggGACGACGACc -3'
miRNA:   3'- aGUACaaacUGCUCCUa--CUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 39510 0.67 0.99974
Target:  5'- cCAaGg--GGCGGGGGgcGCGGCGACa -3'
miRNA:   3'- aGUaCaaaCUGCUCCUacUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 39939 0.72 0.978496
Target:  5'- gCGUGUgguGCgGAGGAcGGCGACGGCg -3'
miRNA:   3'- aGUACAaacUG-CUCCUaCUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 40096 0.68 0.998852
Target:  5'- cCcgGg--GGCGAGG--GACGACGGCc -3'
miRNA:   3'- aGuaCaaaCUGCUCCuaCUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 47814 0.67 0.999795
Target:  5'- aCAUGaUUUGGgGGGGAccGGCGGCG-Ca -3'
miRNA:   3'- aGUAC-AAACUgCUCCUa-CUGCUGCuG- -5'
1587 5' -48.5 NC_001347.2 + 63059 0.7 0.993892
Target:  5'- gUCAUGggUGGCgGAGGAcUGcCGGCGGg -3'
miRNA:   3'- -AGUACaaACUG-CUCCU-ACuGCUGCUg -5'
1587 5' -48.5 NC_001347.2 + 66683 0.71 0.990744
Target:  5'- -------aGAgGAGGAgGACGACGACg -3'
miRNA:   3'- aguacaaaCUgCUCCUaCUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 66788 0.67 0.999591
Target:  5'- -------cGACGGuGGUGGCGGCGGCg -3'
miRNA:   3'- aguacaaaCUGCUcCUACUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 77315 0.68 0.999055
Target:  5'- gCGUGggccgcGGCGuGGAUGACGAggccgucauCGACa -3'
miRNA:   3'- aGUACaaa---CUGCuCCUACUGCU---------GCUG- -5'
1587 5' -48.5 NC_001347.2 + 85923 0.68 0.999226
Target:  5'- cUCGUGUUUGAuacCGAacuGGAUGccCGGCGAg -3'
miRNA:   3'- -AGUACAAACU---GCU---CCUACu-GCUGCUg -5'
1587 5' -48.5 NC_001347.2 + 95423 0.72 0.978496
Target:  5'- uUCAUGgcggcugUGGCGGGucgcGACGACGACa -3'
miRNA:   3'- -AGUACaa-----ACUGCUCcua-CUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 105063 0.73 0.969997
Target:  5'- cUCGUGaggccguccggUGAgGAGGAcGGCGACGACc -3'
miRNA:   3'- -AGUACaa---------ACUgCUCCUaCUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 106697 0.7 0.995464
Target:  5'- -------gGACGAGGAUGACcgcaACGACg -3'
miRNA:   3'- aguacaaaCUGCUCCUACUGc---UGCUG- -5'
1587 5' -48.5 NC_001347.2 + 108956 0.67 0.99984
Target:  5'- aCGUGgaa---GAGGAccUGACGAUGACc -3'
miRNA:   3'- aGUACaaacugCUCCU--ACUGCUGCUG- -5'
1587 5' -48.5 NC_001347.2 + 109374 0.72 0.982812
Target:  5'- -------cGACGAGGGUGccgcccaggGCGACGACg -3'
miRNA:   3'- aguacaaaCUGCUCCUAC---------UGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.