Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1587 | 5' | -48.5 | NC_001347.2 | + | 111405 | 0.72 | 0.980744 |
Target: 5'- cCAUGUUUGccggcuuCGAGGAaGccaGCGGCGACg -3' miRNA: 3'- aGUACAAACu------GCUCCUaC---UGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 112465 | 0.68 | 0.999055 |
Target: 5'- cUCAaGUcuucgucCGAGGAcGACGACGACg -3' miRNA: 3'- -AGUaCAaacu---GCUCCUaCUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 125037 | 0.74 | 0.964278 |
Target: 5'- --cUGUUgcacgGGCucGGGUGACGGCGACa -3' miRNA: 3'- aguACAAa----CUGcuCCUACUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 131696 | 0.79 | 0.793239 |
Target: 5'- aCAUGUacaacauuugagGACGAGGA-GACGACGACc -3' miRNA: 3'- aGUACAaa----------CUGCUCCUaCUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 135065 | 0.68 | 0.999055 |
Target: 5'- aUCGUGUggggacggugaUUGugGAGGGgcguacUGACGACa-- -3' miRNA: 3'- -AGUACA-----------AACugCUCCU------ACUGCUGcug -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 140583 | 0.68 | 0.998852 |
Target: 5'- -gGUGc-UGGCGGGGGUgGugGACGAg -3' miRNA: 3'- agUACaaACUGCUCCUA-CugCUGCUg -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 142560 | 0.67 | 0.99984 |
Target: 5'- -------aGACGAGGcUGGCGGCGuCg -3' miRNA: 3'- aguacaaaCUGCUCCuACUGCUGCuG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 151967 | 0.66 | 0.999904 |
Target: 5'- -gAUGgcacgGACGAcGAcgcUGACGGCGGCg -3' miRNA: 3'- agUACaaa--CUGCUcCU---ACUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 155504 | 0.67 | 0.999795 |
Target: 5'- -------cGACGugcAGGAUGACGugGAUu -3' miRNA: 3'- aguacaaaCUGC---UCCUACUGCugCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 170051 | 0.67 | 0.999591 |
Target: 5'- gCggGUUUuACGAGuGGUGGCGGCGuCg -3' miRNA: 3'- aGuaCAAAcUGCUC-CUACUGCUGCuG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 170654 | 0.67 | 0.999795 |
Target: 5'- ------cUGGCGAGGA-GACGGCG-Cg -3' miRNA: 3'- aguacaaACUGCUCCUaCUGCUGCuG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 178015 | 0.72 | 0.982812 |
Target: 5'- aUCAUGagccugcugGACGAGGccgaGUGGCGACaGACg -3' miRNA: 3'- -AGUACaaa------CUGCUCC----UACUGCUG-CUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 181401 | 1.12 | 0.015557 |
Target: 5'- aUCAUGUUUGACGAGGAUGACGACGACg -3' miRNA: 3'- -AGUACAAACUGCUCCUACUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 182427 | 0.67 | 0.99984 |
Target: 5'- uUCGUGUggaUGACGAcc-UGGCaGACGGCa -3' miRNA: 3'- -AGUACAa--ACUGCUccuACUG-CUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 185286 | 0.67 | 0.99974 |
Target: 5'- cUCggGUggUGAUGAuGAaguucaUGACGACGACg -3' miRNA: 3'- -AGuaCAa-ACUGCUcCU------ACUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 188383 | 0.72 | 0.982812 |
Target: 5'- ---aGUgccGAUGAGGAcGACGACGAUg -3' miRNA: 3'- aguaCAaa-CUGCUCCUaCUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 189242 | 0.7 | 0.994725 |
Target: 5'- -------cGAgGAGGAaGACGACGACu -3' miRNA: 3'- aguacaaaCUgCUCCUaCUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 192050 | 0.7 | 0.993892 |
Target: 5'- -------cGACGAcGGUGGCGGCGACg -3' miRNA: 3'- aguacaaaCUGCUcCUACUGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 197552 | 0.67 | 0.99974 |
Target: 5'- gCGUGgccGGCGuGGcgGcCGACGGCa -3' miRNA: 3'- aGUACaaaCUGCuCCuaCuGCUGCUG- -5' |
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1587 | 5' | -48.5 | NC_001347.2 | + | 229026 | 0.66 | 0.999904 |
Target: 5'- aCGUGUguugGGCGucuGGGUGAa-GCGGCg -3' miRNA: 3'- aGUACAaa--CUGCu--CCUACUgcUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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