miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15872 5' -58.7 NC_004065.1 + 192100 0.66 0.89653
Target:  5'- -aGACGC-GAg--GGACCAGCaGCGUg -3'
miRNA:   3'- gaCUGCGaCUacgCCUGGUCGgCGCG- -5'
15872 5' -58.7 NC_004065.1 + 72026 0.66 0.89653
Target:  5'- -cGACGCUGAUgGCGGcgcugcacCCGGaguaCGUGUa -3'
miRNA:   3'- gaCUGCGACUA-CGCCu-------GGUCg---GCGCG- -5'
15872 5' -58.7 NC_004065.1 + 126235 0.66 0.89653
Target:  5'- -gGGCGUcuucacgcccgUGcgGCGGAUCgAGCCGCccaGCg -3'
miRNA:   3'- gaCUGCG-----------ACuaCGCCUGG-UCGGCG---CG- -5'
15872 5' -58.7 NC_004065.1 + 69460 0.66 0.89653
Target:  5'- gUGuCGCaGAUGuCGcGCCGGCUGCGg -3'
miRNA:   3'- gACuGCGaCUAC-GCcUGGUCGGCGCg -5'
15872 5' -58.7 NC_004065.1 + 130181 0.66 0.89653
Target:  5'- -cGGCGCcaucUGGUGC-GACgGgGCCGUGCu -3'
miRNA:   3'- gaCUGCG----ACUACGcCUGgU-CGGCGCG- -5'
15872 5' -58.7 NC_004065.1 + 188513 0.66 0.89653
Target:  5'- -cGACuCUGgcG-GGACCGcCCGCGCg -3'
miRNA:   3'- gaCUGcGACuaCgCCUGGUcGGCGCG- -5'
15872 5' -58.7 NC_004065.1 + 29974 0.66 0.895905
Target:  5'- gCUGGCgGCgGcgGCGGcggcagugguaucGCCagaGGCUGCGCg -3'
miRNA:   3'- -GACUG-CGaCuaCGCC-------------UGG---UCGGCGCG- -5'
15872 5' -58.7 NC_004065.1 + 92163 0.66 0.894649
Target:  5'- -cGACGCUGucggcggcgaucgacGCGGucaaguuUCAGCCGUGUa -3'
miRNA:   3'- gaCUGCGACua-------------CGCCu------GGUCGGCGCG- -5'
15872 5' -58.7 NC_004065.1 + 118617 0.66 0.890187
Target:  5'- -aGACGggGAggaaucCGGcCCGGUCGCGCa -3'
miRNA:   3'- gaCUGCgaCUac----GCCuGGUCGGCGCG- -5'
15872 5' -58.7 NC_004065.1 + 67118 0.66 0.890187
Target:  5'- -gGACGCc-GUGCuGGA-CAGCgGCGCg -3'
miRNA:   3'- gaCUGCGacUACG-CCUgGUCGgCGCG- -5'
15872 5' -58.7 NC_004065.1 + 83171 0.66 0.890187
Target:  5'- --cGCGCcGAUGCaGACCAGgCGCu- -3'
miRNA:   3'- gacUGCGaCUACGcCUGGUCgGCGcg -5'
15872 5' -58.7 NC_004065.1 + 146178 0.66 0.890187
Target:  5'- -cGACgaaGCUcGAguCGGGCCAGCUGgGCg -3'
miRNA:   3'- gaCUG---CGA-CUacGCCUGGUCGGCgCG- -5'
15872 5' -58.7 NC_004065.1 + 93531 0.66 0.890187
Target:  5'- aUGACGCUGggGUccaGACCgccggAGCCGC-Cg -3'
miRNA:   3'- gACUGCGACuaCGc--CUGG-----UCGGCGcG- -5'
15872 5' -58.7 NC_004065.1 + 35557 0.66 0.890187
Target:  5'- -gGAgGCgUGAgcgGCGGcGCC-GCCGUGCc -3'
miRNA:   3'- gaCUgCG-ACUa--CGCC-UGGuCGGCGCG- -5'
15872 5' -58.7 NC_004065.1 + 198936 0.66 0.883637
Target:  5'- -gGGCGUucUGAUcgccgcccGUGGccACCAGCCGCGa -3'
miRNA:   3'- gaCUGCG--ACUA--------CGCC--UGGUCGGCGCg -5'
15872 5' -58.7 NC_004065.1 + 159365 0.66 0.883637
Target:  5'- cCUGAUGC-GGUGCuggguGAUCAGaUCGCGCc -3'
miRNA:   3'- -GACUGCGaCUACGc----CUGGUC-GGCGCG- -5'
15872 5' -58.7 NC_004065.1 + 192004 0.66 0.883637
Target:  5'- -gGAUGgUG-UGCGGGCCAcCCGUGg -3'
miRNA:   3'- gaCUGCgACuACGCCUGGUcGGCGCg -5'
15872 5' -58.7 NC_004065.1 + 207511 0.66 0.883637
Target:  5'- -cGGCGC-GAUaGCGGucgucgguCCuccucGCCGCGCg -3'
miRNA:   3'- gaCUGCGaCUA-CGCCu-------GGu----CGGCGCG- -5'
15872 5' -58.7 NC_004065.1 + 224526 0.66 0.882971
Target:  5'- -aGGCGCUGGaucgugcUGCGGGCgAGaCGUGg -3'
miRNA:   3'- gaCUGCGACU-------ACGCCUGgUCgGCGCg -5'
15872 5' -58.7 NC_004065.1 + 192245 0.66 0.876883
Target:  5'- gCUGGCGCUGA-GU--GCCAGUCGguaGCg -3'
miRNA:   3'- -GACUGCGACUaCGccUGGUCGGCg--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.