miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15875 3' -57 NC_004065.1 + 141614 0.65 0.940523
Target:  5'- cGGGCUCcgcUGCCggcGGUggcggcucggcgacGGAGGGCGGu -3'
miRNA:   3'- -UCUGAGuaaGCGGa--CCA--------------CCUCCCGCU- -5'
15875 3' -57 NC_004065.1 + 88961 0.66 0.937299
Target:  5'- cGGGCUCGcgCGUgaUGGUGGccaccuGGGGCGc -3'
miRNA:   3'- -UCUGAGUaaGCGg-ACCACC------UCCCGCu -5'
15875 3' -57 NC_004065.1 + 200758 0.66 0.93683
Target:  5'- cGGCUCAcgcgucggUCGCuCUcucgucgcgcggcGGUGGcGGGCGAc -3'
miRNA:   3'- uCUGAGUa-------AGCG-GA-------------CCACCuCCCGCU- -5'
15875 3' -57 NC_004065.1 + 217163 0.66 0.935884
Target:  5'- -cGCUCGUucucgugugugcucUCGUCgaGGUGGuuGGGCGAu -3'
miRNA:   3'- ucUGAGUA--------------AGCGGa-CCACCu-CCCGCU- -5'
15875 3' -57 NC_004065.1 + 12047 0.66 0.932504
Target:  5'- -uGCUCGUUCGUCUGc--GAGcGGCGAu -3'
miRNA:   3'- ucUGAGUAAGCGGACcacCUC-CCGCU- -5'
15875 3' -57 NC_004065.1 + 206804 0.67 0.892673
Target:  5'- gGGACUCuucucugUCGCCUGcUGcGAauucGGGCGGg -3'
miRNA:   3'- -UCUGAGua-----AGCGGACcAC-CU----CCCGCU- -5'
15875 3' -57 NC_004065.1 + 169240 0.68 0.872341
Target:  5'- uGGCUCAUguUCGCgaGGcgGGAGGccGCGGc -3'
miRNA:   3'- uCUGAGUA--AGCGgaCCa-CCUCC--CGCU- -5'
15875 3' -57 NC_004065.1 + 30123 0.68 0.85019
Target:  5'- cGGCg-----GCCUGG-GGAGGGCGGg -3'
miRNA:   3'- uCUGaguaagCGGACCaCCUCCCGCU- -5'
15875 3' -57 NC_004065.1 + 38455 0.71 0.689085
Target:  5'- gAGGCUCA-UCGgcacaCUGGUGGuGGGCa- -3'
miRNA:   3'- -UCUGAGUaAGCg----GACCACCuCCCGcu -5'
15875 3' -57 NC_004065.1 + 155823 0.71 0.679267
Target:  5'- cGGGCUCAggUUCGCgacGGUgcgcuGGAGGGCGGu -3'
miRNA:   3'- -UCUGAGU--AAGCGga-CCA-----CCUCCCGCU- -5'
15875 3' -57 NC_004065.1 + 63710 0.75 0.47554
Target:  5'- cGGGC-CGUgaUCGCCUGGUGGucGGCGc -3'
miRNA:   3'- -UCUGaGUA--AGCGGACCACCucCCGCu -5'
15875 3' -57 NC_004065.1 + 61154 1.09 0.00363
Target:  5'- cAGACUCAUUCGCCUGGUGGAGGGCGAg -3'
miRNA:   3'- -UCUGAGUAAGCGGACCACCUCCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.