miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15876 3' -60.3 NC_004065.1 + 203071 0.66 0.828625
Target:  5'- -cUCCgGAGCCCGcCGCgG-CCgCCGGAg -3'
miRNA:   3'- uaAGG-CUCGGGCaGUGgCaGG-GGCUU- -5'
15876 3' -60.3 NC_004065.1 + 85945 0.66 0.828625
Target:  5'- --gCCGAuCUCaUCGCCGUCCUCGAc -3'
miRNA:   3'- uaaGGCUcGGGcAGUGGCAGGGGCUu -5'
15876 3' -60.3 NC_004065.1 + 53407 0.66 0.828625
Target:  5'- --cCCGGaCCCGUCACggauaGUCCCCa-- -3'
miRNA:   3'- uaaGGCUcGGGCAGUGg----CAGGGGcuu -5'
15876 3' -60.3 NC_004065.1 + 20629 0.66 0.820528
Target:  5'- aGUUCCGcGaCCGuaUCGCCGUCUCCGu- -3'
miRNA:   3'- -UAAGGCuCgGGC--AGUGGCAGGGGCuu -5'
15876 3' -60.3 NC_004065.1 + 485 0.66 0.820528
Target:  5'- -cUCCGGGCCgCG-CGCCGcgUCCgCGGGa -3'
miRNA:   3'- uaAGGCUCGG-GCaGUGGC--AGGgGCUU- -5'
15876 3' -60.3 NC_004065.1 + 195428 0.66 0.812274
Target:  5'- -cUCCc-GCCgCGUCGCCGUCgUCGGAc -3'
miRNA:   3'- uaAGGcuCGG-GCAGUGGCAGgGGCUU- -5'
15876 3' -60.3 NC_004065.1 + 202552 0.66 0.812274
Target:  5'- -aUCCGGGaCCGUgacgaucggACCGUCCCCGu- -3'
miRNA:   3'- uaAGGCUCgGGCAg--------UGGCAGGGGCuu -5'
15876 3' -60.3 NC_004065.1 + 121090 0.66 0.812274
Target:  5'- --cCCGAGCuCUGgacCACCGUCaCCUGGu -3'
miRNA:   3'- uaaGGCUCG-GGCa--GUGGCAG-GGGCUu -5'
15876 3' -60.3 NC_004065.1 + 7767 0.66 0.812274
Target:  5'- ---aCGucAGgCCGUCGCUGUUCCCGAc -3'
miRNA:   3'- uaagGC--UCgGGCAGUGGCAGGGGCUu -5'
15876 3' -60.3 NC_004065.1 + 208049 0.66 0.803872
Target:  5'- --gCCGuggcGGCCC-UCACCGUCCugCCGAc -3'
miRNA:   3'- uaaGGC----UCGGGcAGUGGCAGG--GGCUu -5'
15876 3' -60.3 NC_004065.1 + 82503 0.66 0.803872
Target:  5'- --aCCGAGaCCCccUCAUCGguggCCCCGAAc -3'
miRNA:   3'- uaaGGCUC-GGGc-AGUGGCa---GGGGCUU- -5'
15876 3' -60.3 NC_004065.1 + 204139 0.66 0.795329
Target:  5'- --gCCGGGgCCGUgAuaaccuUCGUCCCCGAu -3'
miRNA:   3'- uaaGGCUCgGGCAgU------GGCAGGGGCUu -5'
15876 3' -60.3 NC_004065.1 + 172177 0.66 0.795329
Target:  5'- -gUCUGGGCgaaCCGUCGucggUCGUCUCCGGAg -3'
miRNA:   3'- uaAGGCUCG---GGCAGU----GGCAGGGGCUU- -5'
15876 3' -60.3 NC_004065.1 + 102554 0.66 0.786651
Target:  5'- --gCCGcGCCCGacCACC-UCCCCGGGg -3'
miRNA:   3'- uaaGGCuCGGGCa-GUGGcAGGGGCUU- -5'
15876 3' -60.3 NC_004065.1 + 85517 0.66 0.785777
Target:  5'- uUUCCGGucgccgcGCCCGaagUCGCCGUCUCUGu- -3'
miRNA:   3'- uAAGGCU-------CGGGC---AGUGGCAGGGGCuu -5'
15876 3' -60.3 NC_004065.1 + 108264 0.66 0.777848
Target:  5'- -gUCCGA-CCCGUCAUggggaCGUCCgCGGAc -3'
miRNA:   3'- uaAGGCUcGGGCAGUG-----GCAGGgGCUU- -5'
15876 3' -60.3 NC_004065.1 + 127411 0.66 0.777848
Target:  5'- -cUCCcAGgCCGUCACCGUCgaCGAGg -3'
miRNA:   3'- uaAGGcUCgGGCAGUGGCAGggGCUU- -5'
15876 3' -60.3 NC_004065.1 + 77705 0.66 0.777848
Target:  5'- --gUCGAagCCGUCAUCGUCCCCGc- -3'
miRNA:   3'- uaaGGCUcgGGCAGUGGCAGGGGCuu -5'
15876 3' -60.3 NC_004065.1 + 189383 0.67 0.768926
Target:  5'- --aUCGuGCCguucggCGUCACCGUCgCCGAGg -3'
miRNA:   3'- uaaGGCuCGG------GCAGUGGCAGgGGCUU- -5'
15876 3' -60.3 NC_004065.1 + 138853 0.67 0.763519
Target:  5'- cUUCCGcGgCCGUCGCCugcgacgauccguggGUCCUCGAGc -3'
miRNA:   3'- uAAGGCuCgGGCAGUGG---------------CAGGGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.