miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 3' -54 NC_004065.1 + 143403 0.66 0.985361
Target:  5'- uUCCGCGuUGGaGUGUGGaGAUCcGCUGc -3'
miRNA:   3'- uAGGCGC-GCCaCAUAUC-CUAGaUGGC- -5'
15878 3' -54 NC_004065.1 + 81217 0.66 0.983582
Target:  5'- -aCCGCGCGGacuc--GGA-CUGCCGg -3'
miRNA:   3'- uaGGCGCGCCacauauCCUaGAUGGC- -5'
15878 3' -54 NC_004065.1 + 151507 0.66 0.983582
Target:  5'- cUCCucaGCGGUGUucugAGGccgCUGCCGg -3'
miRNA:   3'- uAGGcg-CGCCACAua--UCCua-GAUGGC- -5'
15878 3' -54 NC_004065.1 + 130590 0.66 0.977264
Target:  5'- --gCGCGCGaUGUcgAGGcggcGUCUGCCGc -3'
miRNA:   3'- uagGCGCGCcACAuaUCC----UAGAUGGC- -5'
15878 3' -54 NC_004065.1 + 142853 0.67 0.972157
Target:  5'- -aCCGCGCGGUGc--AGGggCUcCUGg -3'
miRNA:   3'- uaGGCGCGCCACauaUCCuaGAuGGC- -5'
15878 3' -54 NC_004065.1 + 181196 0.67 0.972157
Target:  5'- cGUCUGCuGCGGUGag-AGGAUggUGCCGu -3'
miRNA:   3'- -UAGGCG-CGCCACauaUCCUAg-AUGGC- -5'
15878 3' -54 NC_004065.1 + 62863 0.67 0.963022
Target:  5'- -cCCGgcaGCGGUGUGgcGG-UCUGCUGg -3'
miRNA:   3'- uaGGCg--CGCCACAUauCCuAGAUGGC- -5'
15878 3' -54 NC_004065.1 + 100788 0.69 0.918259
Target:  5'- cUUCGCGCGGUGacguGGAUguagCUGCCa -3'
miRNA:   3'- uAGGCGCGCCACauauCCUA----GAUGGc -5'
15878 3' -54 NC_004065.1 + 148821 0.69 0.911923
Target:  5'- aGUCCGCGCGGUacugcgcGUugGGGAUCaGCUc -3'
miRNA:   3'- -UAGGCGCGCCA-------CAuaUCCUAGaUGGc -5'
15878 3' -54 NC_004065.1 + 46215 0.74 0.715966
Target:  5'- -aCCGCGCGGaGUccgggcuccGaAGGAUCUACCGc -3'
miRNA:   3'- uaGGCGCGCCaCA---------UaUCCUAGAUGGC- -5'
15878 3' -54 NC_004065.1 + 56106 1.08 0.008151
Target:  5'- gAUCCGCGCGGUGUAUAGGAUCUACCGa -3'
miRNA:   3'- -UAGGCGCGCCACAUAUCCUAGAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.