Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15878 | 3' | -54 | NC_004065.1 | + | 46215 | 0.74 | 0.715966 |
Target: 5'- -aCCGCGCGGaGUccgggcuccGaAGGAUCUACCGc -3' miRNA: 3'- uaGGCGCGCCaCA---------UaUCCUAGAUGGC- -5' |
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15878 | 3' | -54 | NC_004065.1 | + | 148821 | 0.69 | 0.911923 |
Target: 5'- aGUCCGCGCGGUacugcgcGUugGGGAUCaGCUc -3' miRNA: 3'- -UAGGCGCGCCA-------CAuaUCCUAGaUGGc -5' |
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15878 | 3' | -54 | NC_004065.1 | + | 100788 | 0.69 | 0.918259 |
Target: 5'- cUUCGCGCGGUGacguGGAUguagCUGCCa -3' miRNA: 3'- uAGGCGCGCCACauauCCUA----GAUGGc -5' |
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15878 | 3' | -54 | NC_004065.1 | + | 62863 | 0.67 | 0.963022 |
Target: 5'- -cCCGgcaGCGGUGUGgcGG-UCUGCUGg -3' miRNA: 3'- uaGGCg--CGCCACAUauCCuAGAUGGC- -5' |
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15878 | 3' | -54 | NC_004065.1 | + | 142853 | 0.67 | 0.972157 |
Target: 5'- -aCCGCGCGGUGc--AGGggCUcCUGg -3' miRNA: 3'- uaGGCGCGCCACauaUCCuaGAuGGC- -5' |
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15878 | 3' | -54 | NC_004065.1 | + | 81217 | 0.66 | 0.983582 |
Target: 5'- -aCCGCGCGGacuc--GGA-CUGCCGg -3' miRNA: 3'- uaGGCGCGCCacauauCCUaGAUGGC- -5' |
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15878 | 3' | -54 | NC_004065.1 | + | 151507 | 0.66 | 0.983582 |
Target: 5'- cUCCucaGCGGUGUucugAGGccgCUGCCGg -3' miRNA: 3'- uAGGcg-CGCCACAua--UCCua-GAUGGC- -5' |
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15878 | 3' | -54 | NC_004065.1 | + | 130590 | 0.66 | 0.977264 |
Target: 5'- --gCGCGCGaUGUcgAGGcggcGUCUGCCGc -3' miRNA: 3'- uagGCGCGCcACAuaUCC----UAGAUGGC- -5' |
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15878 | 3' | -54 | NC_004065.1 | + | 181196 | 0.67 | 0.972157 |
Target: 5'- cGUCUGCuGCGGUGag-AGGAUggUGCCGu -3' miRNA: 3'- -UAGGCG-CGCCACauaUCCUAg-AUGGC- -5' |
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15878 | 3' | -54 | NC_004065.1 | + | 56106 | 1.08 | 0.008151 |
Target: 5'- gAUCCGCGCGGUGUAUAGGAUCUACCGa -3' miRNA: 3'- -UAGGCGCGCCACAUAUCCUAGAUGGC- -5' |
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15878 | 3' | -54 | NC_004065.1 | + | 143403 | 0.66 | 0.985361 |
Target: 5'- uUCCGCGuUGGaGUGUGGaGAUCcGCUGc -3' miRNA: 3'- uAGGCGC-GCCaCAUAUC-CUAGaUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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