miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 62632 0.65 0.902819
Target:  5'- cGCGGCagCagcauugacagcaGCAUugGCGGCGgaGACGGc -3'
miRNA:   3'- cCGCCGg-G-------------UGUGugUGCCGCa-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 134839 0.65 0.901635
Target:  5'- cGGCcucccccggagacgGGCCCugGacccuGCACGGCGgcggcGACGa -3'
miRNA:   3'- -CCG--------------CCGGGugUg----UGUGCCGCa----CUGCc -5'
15878 5' -59.4 NC_004065.1 + 194828 0.65 0.901635
Target:  5'- cGGUGGCCgC-CACGuucuccaggccgacCACGGCG--GCGGa -3'
miRNA:   3'- -CCGCCGG-GuGUGU--------------GUGCCGCacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 78090 0.65 0.90104
Target:  5'- cGCGGaCCCGCuguGCGCGGCuaacaugcgaucGACGGa -3'
miRNA:   3'- cCGCC-GGGUGug-UGUGCCGca----------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 116883 0.66 0.897428
Target:  5'- uGGCGuGCCUGCugACGCuGGgGc-GCGGg -3'
miRNA:   3'- -CCGC-CGGGUGugUGUG-CCgCacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 163010 0.66 0.897428
Target:  5'- uGGCuGCCCGCGCggggcccguACACGgGCGccGACuGGu -3'
miRNA:   3'- -CCGcCGGGUGUG---------UGUGC-CGCa-CUG-CC- -5'
15878 5' -59.4 NC_004065.1 + 120422 0.66 0.897428
Target:  5'- cGCGGCCCGgGggucgaGCGCGGCcUGAUa- -3'
miRNA:   3'- cCGCCGGGUgUg-----UGUGCCGcACUGcc -5'
15878 5' -59.4 NC_004065.1 + 79508 0.66 0.897428
Target:  5'- gGGUGGuuCCCAUcgccgagguACGCACGGCcgaGCGGg -3'
miRNA:   3'- -CCGCC--GGGUG---------UGUGUGCCGcacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 172862 0.66 0.897428
Target:  5'- uGUcGUCUACGCuCGuuucCGGCGUGACGGc -3'
miRNA:   3'- cCGcCGGGUGUGuGU----GCCGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 161997 0.66 0.897428
Target:  5'- uGGCGGCCCACGucCACGaaguacugcCGGUagaACGGc -3'
miRNA:   3'- -CCGCCGGGUGU--GUGU---------GCCGcacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 20700 0.66 0.897428
Target:  5'- gGGCaGUCCccaguaGCACACgACGGCaccGACGGc -3'
miRNA:   3'- -CCGcCGGG------UGUGUG-UGCCGca-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 56542 0.66 0.897428
Target:  5'- uGGCGGCgaCAC-CGCA-GGCGcUGAUGa -3'
miRNA:   3'- -CCGCCGg-GUGuGUGUgCCGC-ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 96642 0.66 0.897428
Target:  5'- cGGCGG-UCGCGaGCucuuucuCGGCGUcGGCGGg -3'
miRNA:   3'- -CCGCCgGGUGUgUGu------GCCGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 67267 0.66 0.891246
Target:  5'- cGCGGCCguuCAacgGCACGGCGgaGACGc -3'
miRNA:   3'- cCGCCGGgu-GUg--UGUGCCGCa-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 149648 0.66 0.891246
Target:  5'- cGGCaGGCCCuGCACGCGCcgcagcGCGUuGACc- -3'
miRNA:   3'- -CCG-CCGGG-UGUGUGUGc-----CGCA-CUGcc -5'
15878 5' -59.4 NC_004065.1 + 207992 0.66 0.891246
Target:  5'- cGCGGCCUGC-C-CGgGGCcGUGGcCGGg -3'
miRNA:   3'- cCGCCGGGUGuGuGUgCCG-CACU-GCC- -5'
15878 5' -59.4 NC_004065.1 + 92431 0.66 0.891246
Target:  5'- ----cCCCACGCugGCcaaccGCGUGACGGa -3'
miRNA:   3'- ccgccGGGUGUGugUGc----CGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 184483 0.66 0.891246
Target:  5'- gGGCGGCugCCGC-CGCcgccGCGGCGccgggUGGCGu -3'
miRNA:   3'- -CCGCCG--GGUGuGUG----UGCCGC-----ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 137830 0.66 0.891246
Target:  5'- cGCGGCCCGCGuCucguuuCGCGuGUGUGuuuugugggacACGGu -3'
miRNA:   3'- cCGCCGGGUGU-Gu-----GUGC-CGCAC-----------UGCC- -5'
15878 5' -59.4 NC_004065.1 + 104782 0.66 0.891246
Target:  5'- cGGCGGCCUcgagACGgGCAuCGaGCugGUGACGc -3'
miRNA:   3'- -CCGCCGGG----UGUgUGU-GC-CG--CACUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.