miRNA display CGI


Results 1 - 20 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 134839 0.65 0.901635
Target:  5'- cGGCcucccccggagacgGGCCCugGacccuGCACGGCGgcggcGACGa -3'
miRNA:   3'- -CCG--------------CCGGGugUg----UGUGCCGCa----CUGCc -5'
15878 5' -59.4 NC_004065.1 + 194828 0.65 0.901635
Target:  5'- cGGUGGCCgC-CACGuucuccaggccgacCACGGCG--GCGGa -3'
miRNA:   3'- -CCGCCGG-GuGUGU--------------GUGCCGCacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 78090 0.65 0.90104
Target:  5'- cGCGGaCCCGCuguGCGCGGCuaacaugcgaucGACGGa -3'
miRNA:   3'- cCGCC-GGGUGug-UGUGCCGca----------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 62632 0.65 0.902819
Target:  5'- cGCGGCagCagcauugacagcaGCAUugGCGGCGgaGACGGc -3'
miRNA:   3'- cCGCCGg-G-------------UGUGugUGCCGCa-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 96642 0.66 0.897428
Target:  5'- cGGCGG-UCGCGaGCucuuucuCGGCGUcGGCGGg -3'
miRNA:   3'- -CCGCCgGGUGUgUGu------GCCGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 98638 0.66 0.884865
Target:  5'- cGGUGcGCUCGgucgcucguacgUACGCGCGGUugcUGACGGg -3'
miRNA:   3'- -CCGC-CGGGU------------GUGUGUGCCGc--ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 20700 0.66 0.897428
Target:  5'- gGGCaGUCCccaguaGCACACgACGGCaccGACGGc -3'
miRNA:   3'- -CCGcCGGG------UGUGUG-UGCCGca-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 130647 0.66 0.871519
Target:  5'- aGGCaGCCCACGCccgucaugcccaACGuCGGCaUGAuCGGc -3'
miRNA:   3'- -CCGcCGGGUGUG------------UGU-GCCGcACU-GCC- -5'
15878 5' -59.4 NC_004065.1 + 56542 0.66 0.897428
Target:  5'- uGGCGGCgaCAC-CGCA-GGCGcUGAUGa -3'
miRNA:   3'- -CCGCCGg-GUGuGUGUgCCGC-ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 168618 0.66 0.871519
Target:  5'- aGCGGCUgCugGCGCugGugccGCG-GGCGGa -3'
miRNA:   3'- cCGCCGG-GugUGUGugC----CGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 182561 0.66 0.891246
Target:  5'- uGGCGGCUguUccaAUAUGGCG-GAUGGg -3'
miRNA:   3'- -CCGCCGGguGug-UGUGCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 38449 0.66 0.891246
Target:  5'- cGGCaggaGGCUCAUcgGCACACuGGUG-GugGGc -3'
miRNA:   3'- -CCG----CCGGGUG--UGUGUG-CCGCaCugCC- -5'
15878 5' -59.4 NC_004065.1 + 120559 0.66 0.884865
Target:  5'- cGGCGGUCgGCGCGa---GCG-GGCGGg -3'
miRNA:   3'- -CCGCCGGgUGUGUgugcCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 161803 0.66 0.878288
Target:  5'- cGGgGGCUgGauggGCGCAUGGaCGgacgGACGGg -3'
miRNA:   3'- -CCgCCGGgUg---UGUGUGCC-GCa---CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 120422 0.66 0.897428
Target:  5'- cGCGGCCCGgGggucgaGCGCGGCcUGAUa- -3'
miRNA:   3'- cCGCCGGGUgUg-----UGUGCCGcACUGcc -5'
15878 5' -59.4 NC_004065.1 + 70480 0.66 0.884865
Target:  5'- cGGCGGCguUCAgGgACACcgugaaGGCGaUGGCGGc -3'
miRNA:   3'- -CCGCCG--GGUgUgUGUG------CCGC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 16848 0.66 0.884865
Target:  5'- cGCaGUUCugcGCACGCACGGCGagGGCGa -3'
miRNA:   3'- cCGcCGGG---UGUGUGUGCCGCa-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 222180 0.66 0.878288
Target:  5'- uGCGGCCCu--C-CAUGGC-UGAUGGu -3'
miRNA:   3'- cCGCCGGGuguGuGUGCCGcACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 149648 0.66 0.891246
Target:  5'- cGGCaGGCCCuGCACGCGCcgcagcGCGUuGACc- -3'
miRNA:   3'- -CCG-CCGGG-UGUGUGUGc-----CGCA-CUGcc -5'
15878 5' -59.4 NC_004065.1 + 173872 0.66 0.871519
Target:  5'- aGGC-GCCguCACGC-CGuGUGUGugGGc -3'
miRNA:   3'- -CCGcCGGguGUGUGuGC-CGCACugCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.