miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 182561 0.66 0.891246
Target:  5'- uGGCGGCUguUccaAUAUGGCG-GAUGGg -3'
miRNA:   3'- -CCGCCGGguGug-UGUGCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 198026 0.66 0.884865
Target:  5'- aGGCGGUCgCGguCGC-CGGCGguuccaagggGAUGGa -3'
miRNA:   3'- -CCGCCGG-GUguGUGuGCCGCa---------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 88385 0.66 0.884865
Target:  5'- uGGCGGUgUAgGCcaGCugGcGCGUGAUGa -3'
miRNA:   3'- -CCGCCGgGUgUG--UGugC-CGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 881 0.66 0.871519
Target:  5'- gGGCGcCCCGCcgGCAUGCuacaGGCGUuACGGg -3'
miRNA:   3'- -CCGCcGGGUG--UGUGUG----CCGCAcUGCC- -5'
15878 5' -59.4 NC_004065.1 + 149648 0.66 0.891246
Target:  5'- cGGCaGGCCCuGCACGCGCcgcagcGCGUuGACc- -3'
miRNA:   3'- -CCG-CCGGG-UGUGUGUGc-----CGCA-CUGcc -5'
15878 5' -59.4 NC_004065.1 + 56542 0.66 0.897428
Target:  5'- uGGCGGCgaCAC-CGCA-GGCGcUGAUGa -3'
miRNA:   3'- -CCGCCGg-GUGuGUGUgCCGC-ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 219625 0.66 0.890617
Target:  5'- uGGUGGUaaaaugaCCGCGCACACGcGCGagGuACGa -3'
miRNA:   3'- -CCGCCG-------GGUGUGUGUGC-CGCa-C-UGCc -5'
15878 5' -59.4 NC_004065.1 + 104782 0.66 0.891246
Target:  5'- cGGCGGCCUcgagACGgGCAuCGaGCugGUGACGc -3'
miRNA:   3'- -CCGCCGGG----UGUgUGU-GC-CG--CACUGCc -5'
15878 5' -59.4 NC_004065.1 + 20700 0.66 0.897428
Target:  5'- gGGCaGUCCccaguaGCACACgACGGCaccGACGGc -3'
miRNA:   3'- -CCGcCGGG------UGUGUG-UGCCGca-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 38449 0.66 0.891246
Target:  5'- cGGCaggaGGCUCAUcgGCACACuGGUG-GugGGc -3'
miRNA:   3'- -CCG----CCGGGUG--UGUGUG-CCGCaCugCC- -5'
15878 5' -59.4 NC_004065.1 + 77835 0.66 0.884865
Target:  5'- cGGaaccaGGCUC-CGgACGCGGCGUGGgcucccCGGu -3'
miRNA:   3'- -CCg----CCGGGuGUgUGUGCCGCACU------GCC- -5'
15878 5' -59.4 NC_004065.1 + 33794 0.66 0.870832
Target:  5'- -uCGGCCCG-ACAUGCGGaCGUGggacgacGCGGa -3'
miRNA:   3'- ccGCCGGGUgUGUGUGCC-GCAC-------UGCC- -5'
15878 5' -59.4 NC_004065.1 + 1 0.66 0.884865
Target:  5'- --gGGCCCGCGCGCacucagACGGCcggGGgGGa -3'
miRNA:   3'- ccgCCGGGUGUGUG------UGCCGca-CUgCC- -5'
15878 5' -59.4 NC_004065.1 + 188652 0.66 0.878288
Target:  5'- cGauGUCCGCucgaggGCGCGCGGCGggagacGACGGu -3'
miRNA:   3'- cCgcCGGGUG------UGUGUGCCGCa-----CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 96642 0.66 0.897428
Target:  5'- cGGCGG-UCGCGaGCucuuucuCGGCGUcGGCGGg -3'
miRNA:   3'- -CCGCCgGGUGUgUGu------GCCGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 26451 0.66 0.871519
Target:  5'- uGCGGUaCGCAUACACguuGGUGgucGACGGc -3'
miRNA:   3'- cCGCCGgGUGUGUGUG---CCGCa--CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 200319 0.66 0.871519
Target:  5'- gGGCGGCguCCGC-CGCucgacCGGCGaUGACa- -3'
miRNA:   3'- -CCGCCG--GGUGuGUGu----GCCGC-ACUGcc -5'
15878 5' -59.4 NC_004065.1 + 104126 0.66 0.878288
Target:  5'- cGGCcgGGCCUACA-GCACGGCG-GAg-- -3'
miRNA:   3'- -CCG--CCGGGUGUgUGUGCCGCaCUgcc -5'
15878 5' -59.4 NC_004065.1 + 208955 0.66 0.871519
Target:  5'- uGUccCCUACGgACACGGUGUGGCGa -3'
miRNA:   3'- cCGccGGGUGUgUGUGCCGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 148850 0.66 0.871519
Target:  5'- aGGCGG-CCGC-CGCGaucgaggaGGCGgcGGCGGg -3'
miRNA:   3'- -CCGCCgGGUGuGUGUg-------CCGCa-CUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.