miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 222180 0.66 0.878288
Target:  5'- uGCGGCCCu--C-CAUGGC-UGAUGGu -3'
miRNA:   3'- cCGCCGGGuguGuGUGCCGcACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 149648 0.66 0.891246
Target:  5'- cGGCaGGCCCuGCACGCGCcgcagcGCGUuGACc- -3'
miRNA:   3'- -CCG-CCGGG-UGUGUGUGc-----CGCA-CUGcc -5'
15878 5' -59.4 NC_004065.1 + 56542 0.66 0.897428
Target:  5'- uGGCGGCgaCAC-CGCA-GGCGcUGAUGa -3'
miRNA:   3'- -CCGCCGg-GUGuGUGUgCCGC-ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 67267 0.66 0.891246
Target:  5'- cGCGGCCguuCAacgGCACGGCGgaGACGc -3'
miRNA:   3'- cCGCCGGgu-GUg--UGUGCCGCa-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 20700 0.66 0.897428
Target:  5'- gGGCaGUCCccaguaGCACACgACGGCaccGACGGc -3'
miRNA:   3'- -CCGcCGGG------UGUGUG-UGCCGca-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 182561 0.66 0.891246
Target:  5'- uGGCGGCUguUccaAUAUGGCG-GAUGGg -3'
miRNA:   3'- -CCGCCGGguGug-UGUGCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 98638 0.66 0.884865
Target:  5'- cGGUGcGCUCGgucgcucguacgUACGCGCGGUugcUGACGGg -3'
miRNA:   3'- -CCGC-CGGGU------------GUGUGUGCCGc--ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 16848 0.66 0.884865
Target:  5'- cGCaGUUCugcGCACGCACGGCGagGGCGa -3'
miRNA:   3'- cCGcCGGG---UGUGUGUGCCGCa-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 225048 0.66 0.884865
Target:  5'- uGaaGCCCGaGCGCACGuCGUGAUGGc -3'
miRNA:   3'- cCgcCGGGUgUGUGUGCcGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 120559 0.66 0.884865
Target:  5'- cGGCGGUCgGCGCGa---GCG-GGCGGg -3'
miRNA:   3'- -CCGCCGGgUGUGUgugcCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 70480 0.66 0.884865
Target:  5'- cGGCGGCguUCAgGgACACcgugaaGGCGaUGGCGGc -3'
miRNA:   3'- -CCGCCG--GGUgUgUGUG------CCGC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 69292 0.67 0.82713
Target:  5'- aGGCGcGCgUACGUGCA-GGCGgUGACGGg -3'
miRNA:   3'- -CCGC-CGgGUGUGUGUgCCGC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 52658 0.67 0.82713
Target:  5'- -uUGGCCgC-CGCugGCGGUggcgGUGGCGGa -3'
miRNA:   3'- ccGCCGG-GuGUGugUGCCG----CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 112301 0.67 0.842611
Target:  5'- cGGUGcGCgCGCGagagACGCGaGgGUGACGGg -3'
miRNA:   3'- -CCGC-CGgGUGUg---UGUGC-CgCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 76738 0.67 0.834952
Target:  5'- cGGCGGgg-ACGgGCGCGGCGccGGCGGc -3'
miRNA:   3'- -CCGCCgggUGUgUGUGCCGCa-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 115786 0.67 0.864562
Target:  5'- uGGCGGUCC-CGgGCACGGaaacuGCGGc -3'
miRNA:   3'- -CCGCCGGGuGUgUGUGCCgcac-UGCC- -5'
15878 5' -59.4 NC_004065.1 + 164764 0.67 0.857422
Target:  5'- --aGGCCCAgACcuCACGGag-GACGGg -3'
miRNA:   3'- ccgCCGGGUgUGu-GUGCCgcaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 77391 0.67 0.857422
Target:  5'- uGGUGgagaacaucacGCUgGCGCACAUGGCgGUGAccCGGg -3'
miRNA:   3'- -CCGC-----------CGGgUGUGUGUGCCG-CACU--GCC- -5'
15878 5' -59.4 NC_004065.1 + 166524 0.67 0.864562
Target:  5'- gGGCGaGgCCAUccgcaccuggcuGCGCgACGGCGccUGGCGGc -3'
miRNA:   3'- -CCGC-CgGGUG------------UGUG-UGCCGC--ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 166165 0.67 0.864562
Target:  5'- uGGUGGUCCuuCGCgaACGCGGCcaUGGCGa -3'
miRNA:   3'- -CCGCCGGGu-GUG--UGUGCCGc-ACUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.