Results 61 - 80 of 189 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 131316 | 0.67 | 0.864562 |
Target: 5'- aGGUGGUCgAgAaGCugGGCGUccccauGACGGg -3' miRNA: 3'- -CCGCCGGgUgUgUGugCCGCA------CUGCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 112301 | 0.67 | 0.842611 |
Target: 5'- cGGUGcGCgCGCGagagACGCGaGgGUGACGGg -3' miRNA: 3'- -CCGC-CGgGUGUg---UGUGC-CgCACUGCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 58603 | 0.67 | 0.842611 |
Target: 5'- cGGCGGagucgagaUCgACGCGCGCGGCGgagucGcCGGu -3' miRNA: 3'- -CCGCC--------GGgUGUGUGUGCCGCa----CuGCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 81449 | 0.67 | 0.82713 |
Target: 5'- cGGCaccaGGCCC-CGCACGgGGC-UGAccCGGa -3' miRNA: 3'- -CCG----CCGGGuGUGUGUgCCGcACU--GCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 197478 | 0.67 | 0.82713 |
Target: 5'- cGGCGGa-UAC-CGC-CGGCGcGACGGg -3' miRNA: 3'- -CCGCCggGUGuGUGuGCCGCaCUGCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 168162 | 0.67 | 0.834952 |
Target: 5'- aGCaGGCCCuucCGCGCGgGGCGcGACa- -3' miRNA: 3'- cCG-CCGGGu--GUGUGUgCCGCaCUGcc -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 222638 | 0.67 | 0.842611 |
Target: 5'- cGGuCGGCCCuuUACAUACucaccgcaGGUGUgGGCGGu -3' miRNA: 3'- -CC-GCCGGGu-GUGUGUG--------CCGCA-CUGCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 172108 | 0.67 | 0.857422 |
Target: 5'- aGGCGGCUCugAC-CGCGGUGgcuACu- -3' miRNA: 3'- -CCGCCGGGugUGuGUGCCGCac-UGcc -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 94405 | 0.67 | 0.834952 |
Target: 5'- uGGUGGCgCCGUAgAC-CcGCGUGACGGc -3' miRNA: 3'- -CCGCCG-GGUGUgUGuGcCGCACUGCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 115786 | 0.67 | 0.864562 |
Target: 5'- uGGCGGUCC-CGgGCACGGaaacuGCGGc -3' miRNA: 3'- -CCGCCGGGuGUgUGUGCCgcac-UGCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 6913 | 0.67 | 0.842611 |
Target: 5'- cGGCGGCUUcagcuGCGgGCACGGCcucGGCGu -3' miRNA: 3'- -CCGCCGGG-----UGUgUGUGCCGca-CUGCc -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 166524 | 0.67 | 0.864562 |
Target: 5'- gGGCGaGgCCAUccgcaccuggcuGCGCgACGGCGccUGGCGGc -3' miRNA: 3'- -CCGC-CgGGUG------------UGUG-UGCCGC--ACUGCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 66586 | 0.67 | 0.834952 |
Target: 5'- aGUGGCCgAC-UGCACGGCG--GCGGc -3' miRNA: 3'- cCGCCGGgUGuGUGUGCCGCacUGCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 131414 | 0.67 | 0.842611 |
Target: 5'- aGGCGGCgaaaCCAUGCuGCGgacCGGCGUcaagaGACGGc -3' miRNA: 3'- -CCGCCG----GGUGUG-UGU---GCCGCA-----CUGCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 97933 | 0.67 | 0.857422 |
Target: 5'- cGCGcGUCCG-GCAC-CGGCGUGGCa- -3' miRNA: 3'- cCGC-CGGGUgUGUGuGCCGCACUGcc -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 136635 | 0.67 | 0.842611 |
Target: 5'- cGGCGGUCCGgA---GCGGCGUGGauccUGGu -3' miRNA: 3'- -CCGCCGGGUgUgugUGCCGCACU----GCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 52658 | 0.67 | 0.82713 |
Target: 5'- -uUGGCCgC-CGCugGCGGUggcgGUGGCGGa -3' miRNA: 3'- ccGCCGG-GuGUGugUGCCG----CACUGCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 69292 | 0.67 | 0.82713 |
Target: 5'- aGGCGcGCgUACGUGCA-GGCGgUGACGGg -3' miRNA: 3'- -CCGC-CGgGUGUGUGUgCCGC-ACUGCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 76738 | 0.67 | 0.834952 |
Target: 5'- cGGCGGgg-ACGgGCGCGGCGccGGCGGc -3' miRNA: 3'- -CCGCCgggUGUgUGUGCCGCa-CUGCC- -5' |
|||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 201486 | 0.67 | 0.857422 |
Target: 5'- uGCGGCgCA-GCAUGCGGCG-GGCGc -3' miRNA: 3'- cCGCCGgGUgUGUGUGCCGCaCUGCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home