Results 81 - 100 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 112301 | 0.67 | 0.842611 |
Target: 5'- cGGUGcGCgCGCGagagACGCGaGgGUGACGGg -3' miRNA: 3'- -CCGC-CGgGUGUg---UGUGC-CgCACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 39185 | 0.68 | 0.819154 |
Target: 5'- cGGCGGCgugguuauuUCuCGCGCACGGUGUcGCGu -3' miRNA: 3'- -CCGCCG---------GGuGUGUGUGCCGCAcUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 106341 | 0.68 | 0.819154 |
Target: 5'- gGGCGGCCCgGCGCugcuGCACGGgcagcgcgccaCGUG-CGa -3' miRNA: 3'- -CCGCCGGG-UGUG----UGUGCC-----------GCACuGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 114021 | 0.68 | 0.802762 |
Target: 5'- aGCuGCCCccgcgGCGCACGuCGGCG-GACGa -3' miRNA: 3'- cCGcCGGG-----UGUGUGU-GCCGCaCUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 31471 | 0.68 | 0.777177 |
Target: 5'- aGCGGUCCGugcCGCGCGCGGaccugGUG-CGGc -3' miRNA: 3'- cCGCCGGGU---GUGUGUGCCg----CACuGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 187391 | 0.68 | 0.79436 |
Target: 5'- aGCuGGCgCGCG-GCGCGGUGUGGCGu -3' miRNA: 3'- cCG-CCGgGUGUgUGUGCCGCACUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 105372 | 0.68 | 0.802762 |
Target: 5'- cGGCGGaCCCGgacuCGCugACGGCc-GGCGa -3' miRNA: 3'- -CCGCC-GGGU----GUGugUGCCGcaCUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 142479 | 0.68 | 0.777177 |
Target: 5'- gGGCGGUggACGCGagcCAgGGgGUGGCGGu -3' miRNA: 3'- -CCGCCGggUGUGU---GUgCCgCACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 78670 | 0.68 | 0.785829 |
Target: 5'- aGCGGCCgGCGC-CGCGGCGcccgagaGCGa -3' miRNA: 3'- cCGCCGGgUGUGuGUGCCGCac-----UGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 171702 | 0.68 | 0.777177 |
Target: 5'- aGCuGGCCUGCACGC-UGcGCGUcauGACGGa -3' miRNA: 3'- cCG-CCGGGUGUGUGuGC-CGCA---CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 200522 | 0.68 | 0.784969 |
Target: 5'- -uCGGaucgCCGCGCACAgGGCGUccauggcgagggcGACGGg -3' miRNA: 3'- ccGCCg---GGUGUGUGUgCCGCA-------------CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 127223 | 0.68 | 0.777177 |
Target: 5'- cGGCGGCCgCGaggauCGgGCGCGGU--GGCGGg -3' miRNA: 3'- -CCGCCGG-GU-----GUgUGUGCCGcaCUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 66282 | 0.68 | 0.789256 |
Target: 5'- uGGUGGCCCugcccgaguucacggACACGCugcggaagaucGCGGCGgacaacGCGGa -3' miRNA: 3'- -CCGCCGGG---------------UGUGUG-----------UGCCGCac----UGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 5205 | 0.68 | 0.79436 |
Target: 5'- aGCGGCUCAUAaauCGCGGCGaccggUGAUGa -3' miRNA: 3'- cCGCCGGGUGUgu-GUGCCGC-----ACUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 122504 | 0.68 | 0.802762 |
Target: 5'- gGGCGGUcgCCGCGCGCACcuccuCGUGcgaGCGGu -3' miRNA: 3'- -CCGCCG--GGUGUGUGUGcc---GCAC---UGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 30015 | 0.68 | 0.802762 |
Target: 5'- cGCGaCCguCACcgGCGCGGUGgUGACGGg -3' miRNA: 3'- cCGCcGGguGUG--UGUGCCGC-ACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 76531 | 0.68 | 0.814297 |
Target: 5'- cGGCGGCguguucgcaCCugucgcaccccccguACACAUgccgcagaaaaGCGGCGUGACGu -3' miRNA: 3'- -CCGCCG---------GG---------------UGUGUG-----------UGCCGCACUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 113916 | 0.68 | 0.817541 |
Target: 5'- gGGCGGagaUCGCGCgugucgacgACGCGGCGcucgggggcuggGACGGa -3' miRNA: 3'- -CCGCCg--GGUGUG---------UGUGCCGCa-----------CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 26041 | 0.68 | 0.819154 |
Target: 5'- aGCGGCUC--GCACGCGGCGUcGAa-- -3' miRNA: 3'- cCGCCGGGugUGUGUGCCGCA-CUgcc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 121411 | 0.68 | 0.819154 |
Target: 5'- aGCuGCCCGC-CGgACGGCGgcuucagcgGAUGGg -3' miRNA: 3'- cCGcCGGGUGuGUgUGCCGCa--------CUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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