miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 56146 1.11 0.001963
Target:  5'- cGGCGGCCCACACACACGGCGUGACGGc -3'
miRNA:   3'- -CCGCCGGGUGUGUGUGCCGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 105848 0.78 0.301347
Target:  5'- cGGCGGCCUGCGCGCAcacccuggaguCGGUGuUGACGc -3'
miRNA:   3'- -CCGCCGGGUGUGUGU-----------GCCGC-ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 200755 0.77 0.313938
Target:  5'- aGGCGGCUCACGCgucggucGCucucucgucgcGCGGCGgUGGCGGg -3'
miRNA:   3'- -CCGCCGGGUGUG-------UG-----------UGCCGC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 184198 0.77 0.334619
Target:  5'- cGGcCGGUCCGauacaugcccaccCGCACGCGGCGUGugGc -3'
miRNA:   3'- -CC-GCCGGGU-------------GUGUGUGCCGCACugCc -5'
15878 5' -59.4 NC_004065.1 + 133984 0.76 0.349679
Target:  5'- cGGCGGCCggggcccgugccCACGCACGCGG-G-GGCGGu -3'
miRNA:   3'- -CCGCCGG------------GUGUGUGUGCCgCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 22077 0.76 0.369741
Target:  5'- cGGCGGCCCAaccCGCGCGCuccgaagaucauauGcGCGUcGACGGg -3'
miRNA:   3'- -CCGCCGGGU---GUGUGUG--------------C-CGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 90025 0.76 0.363715
Target:  5'- cGGCGGCgucagcuCCACGCuCAUGGCGacGGCGGg -3'
miRNA:   3'- -CCGCCG-------GGUGUGuGUGCCGCa-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 130058 0.75 0.40328
Target:  5'- cGCGGCCCgaGCACGcCGCGGCG-GugGu -3'
miRNA:   3'- cCGCCGGG--UGUGU-GUGCCGCaCugCc -5'
15878 5' -59.4 NC_004065.1 + 119188 0.75 0.411351
Target:  5'- gGGCGGCCCGCGCcccGCACuGGUGccUGGCa- -3'
miRNA:   3'- -CCGCCGGGUGUG---UGUG-CCGC--ACUGcc -5'
15878 5' -59.4 NC_004065.1 + 191554 0.75 0.39531
Target:  5'- gGGCGGCUCACucuuccGCACGCGuGCgGUGAuCGGc -3'
miRNA:   3'- -CCGCCGGGUG------UGUGUGC-CG-CACU-GCC- -5'
15878 5' -59.4 NC_004065.1 + 67749 0.75 0.427791
Target:  5'- aGCGGCgCCGCGuCcgACGGCGUGACGa -3'
miRNA:   3'- cCGCCG-GGUGU-GugUGCCGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 134161 0.74 0.470521
Target:  5'- uGGUGGUCCACACGCaggACGGCuccGUcugcaucaaGACGGg -3'
miRNA:   3'- -CCGCCGGGUGUGUG---UGCCG---CA---------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 46170 0.74 0.470521
Target:  5'- cGGCcacGGCCaaACACGCgACGGCGUGGgGGc -3'
miRNA:   3'- -CCG---CCGGg-UGUGUG-UGCCGCACUgCC- -5'
15878 5' -59.4 NC_004065.1 + 132826 0.73 0.497178
Target:  5'- aGGCuGGCCUACAgGCGCaGCGcGACGa -3'
miRNA:   3'- -CCG-CCGGGUGUgUGUGcCGCaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 196176 0.73 0.506214
Target:  5'- -cCGGCCUuucucuucaugGCGCGCACGGCGUgguuGAUGGc -3'
miRNA:   3'- ccGCCGGG-----------UGUGUGUGCCGCA----CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 133055 0.73 0.533724
Target:  5'- cGGaCGGCCgGCGCagcagGCGCGGCagcaGACGGg -3'
miRNA:   3'- -CC-GCCGGgUGUG-----UGUGCCGca--CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 195578 0.73 0.524491
Target:  5'- uGCGuGCCCACGCu--CGG-GUGACGGc -3'
miRNA:   3'- cCGC-CGGGUGUGuguGCCgCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 105547 0.73 0.533724
Target:  5'- cGCGGCCCuggacccgGCGCagcgGCACGGCGcgccgucGGCGGg -3'
miRNA:   3'- cCGCCGGG--------UGUG----UGUGCCGCa------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 35572 0.72 0.589203
Target:  5'- aGGCGG-CCACAgGCGgaaucggUGGCGUcGGCGGu -3'
miRNA:   3'- -CCGCCgGGUGUgUGU-------GCCGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 38755 0.72 0.580651
Target:  5'- cGGCGuGCCCGCGaguaccguuucCACACcgGGC-UGACGGu -3'
miRNA:   3'- -CCGC-CGGGUGU-----------GUGUG--CCGcACUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.