Results 41 - 60 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 187989 | 0.71 | 0.628377 |
Target: 5'- uGCGGCCgCGCGCaACAUGGCuc-GCGGa -3' miRNA: 3'- cCGCCGG-GUGUG-UGUGCCGcacUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 46059 | 0.71 | 0.618802 |
Target: 5'- uGGCGGUCCGCGucaaACACaGGC-UGACGa -3' miRNA: 3'- -CCGCCGGGUGUg---UGUG-CCGcACUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 200892 | 0.71 | 0.637954 |
Target: 5'- cGGCuGCCCGuCGCGCugGGCGac-CGGc -3' miRNA: 3'- -CCGcCGGGU-GUGUGugCCGCacuGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 92522 | 0.7 | 0.695096 |
Target: 5'- cGGUGcCUCGCGCGCGCguacgGGCG-GGCGGg -3' miRNA: 3'- -CCGCcGGGUGUGUGUG-----CCGCaCUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 157955 | 0.7 | 0.666636 |
Target: 5'- gGGUGGCguCCACcgGCugGGuCGUGAUGGc -3' miRNA: 3'- -CCGCCG--GGUGugUGugCC-GCACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 138821 | 0.7 | 0.694153 |
Target: 5'- cGGCGGCgccgaugCCGCGCACgccgACGGCGcuuccGCGGc -3' miRNA: 3'- -CCGCCG-------GGUGUGUG----UGCCGCac---UGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 103779 | 0.7 | 0.7045 |
Target: 5'- gGGCGGCUCGaucccCGCACGgGCGUGAa-- -3' miRNA: 3'- -CCGCCGGGUgu---GUGUGC-CGCACUgcc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 128424 | 0.7 | 0.666636 |
Target: 5'- cGGCGGCgCCGcCACcgagucugaGCGCGGCGgaGGCGu -3' miRNA: 3'- -CCGCCG-GGU-GUG---------UGUGCCGCa-CUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 31089 | 0.7 | 0.676156 |
Target: 5'- cGGCGGCCUugGCcgcCAgGGUGgaGCGGg -3' miRNA: 3'- -CCGCCGGGugUGu--GUgCCGCacUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 66626 | 0.7 | 0.713851 |
Target: 5'- cGCGGgCUGCG-GCGCuGCGUGGCGGa -3' miRNA: 3'- cCGCCgGGUGUgUGUGcCGCACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 43147 | 0.7 | 0.685646 |
Target: 5'- cGCGGaagaCACGCGCACGGac-GGCGGg -3' miRNA: 3'- cCGCCgg--GUGUGUGUGCCgcaCUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 125065 | 0.7 | 0.685646 |
Target: 5'- cGCaGGUCCGCGC-CACGaaccGUGUGAUGGa -3' miRNA: 3'- cCG-CCGGGUGUGuGUGC----CGCACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 125 | 0.7 | 0.694153 |
Target: 5'- aGGUGGCUgCGCGCACgucaccgAgGGCGUGGCa- -3' miRNA: 3'- -CCGCCGG-GUGUGUG-------UgCCGCACUGcc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 59716 | 0.7 | 0.695096 |
Target: 5'- aGCGGCC-GCgGCGCACGGCGaccgucGCGGa -3' miRNA: 3'- cCGCCGGgUG-UGUGUGCCGCac----UGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 120466 | 0.7 | 0.712919 |
Target: 5'- aGGCGGCCaccucgagguCGCugACgACGGUGUcgugcccgggguaGACGGu -3' miRNA: 3'- -CCGCCGG----------GUGugUG-UGCCGCA-------------CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 140442 | 0.7 | 0.695096 |
Target: 5'- cGCGGCUguUGC-CGCGGCcgaaguaagGUGACGGg -3' miRNA: 3'- cCGCCGGguGUGuGUGCCG---------CACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 124723 | 0.69 | 0.732363 |
Target: 5'- aGGUucaGGCCCGCGcCGCACG-CGUGguguucagcacgGCGGg -3' miRNA: 3'- -CCG---CCGGGUGU-GUGUGCcGCAC------------UGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 61253 | 0.69 | 0.768412 |
Target: 5'- aGGCgucgaaGGCCU----GCGCGGCGUcGACGGg -3' miRNA: 3'- -CCG------CCGGGugugUGUGCCGCA-CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 135574 | 0.69 | 0.73603 |
Target: 5'- aGGCGGCCgucaccuccuucgaaCACACGCGCcGCuGggaGACGGc -3' miRNA: 3'- -CCGCCGG---------------GUGUGUGUGcCG-Ca--CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 125444 | 0.69 | 0.768412 |
Target: 5'- gGGCaGGuuaCCCACcaugAUGCGCGGCGUGcacaGCGGc -3' miRNA: 3'- -CCG-CC---GGGUG----UGUGUGCCGCAC----UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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