Results 21 - 40 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 88158 | 0.72 | 0.560806 |
Target: 5'- gGGC-GCCCGCuCGCcggacgaGCGGCG-GACGGg -3' miRNA: 3'- -CCGcCGGGUGuGUG-------UGCCGCaCUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 122222 | 0.72 | 0.561747 |
Target: 5'- uGGUGGCCCGCucGCcCACGGCcaaguauccgGGCGGc -3' miRNA: 3'- -CCGCCGGGUG--UGuGUGCCGca--------CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 77205 | 0.72 | 0.561747 |
Target: 5'- cGGCGGCgCC-C-CGCACGGCGaUGGCc- -3' miRNA: 3'- -CCGCCG-GGuGuGUGUGCCGC-ACUGcc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 187662 | 0.72 | 0.57118 |
Target: 5'- cGGCggGGUCCACGgGCACGaGCcUGAUGGu -3' miRNA: 3'- -CCG--CCGGGUGUgUGUGC-CGcACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 98265 | 0.72 | 0.57118 |
Target: 5'- cGGCGGCCCuggGCGCGCGCcucGCG-GAucCGGa -3' miRNA: 3'- -CCGCCGGG---UGUGUGUGc--CGCaCU--GCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 151365 | 0.72 | 0.579703 |
Target: 5'- cGCGGCgCCggccgcuGCGCugGCGGCcgaucucuuggGUGGCGGa -3' miRNA: 3'- cCGCCG-GG-------UGUGugUGCCG-----------CACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 38755 | 0.72 | 0.580651 |
Target: 5'- cGGCGuGCCCGCGaguaccguuucCACACcgGGC-UGACGGu -3' miRNA: 3'- -CCGC-CGGGUGU-----------GUGUG--CCGcACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 35210 | 0.72 | 0.580651 |
Target: 5'- uGGCGGCCaC-CGC-CACGGCGUucaggggcucGACGa -3' miRNA: 3'- -CCGCCGG-GuGUGuGUGCCGCA----------CUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 35572 | 0.72 | 0.589203 |
Target: 5'- aGGCGG-CCACAgGCGgaaucggUGGCGUcGGCGGu -3' miRNA: 3'- -CCGCCgGGUGUgUGU-------GCCGCA-CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 78858 | 0.72 | 0.590154 |
Target: 5'- gGGCGGCCgGCGCGCcagcucGCGGuCGccGACGa -3' miRNA: 3'- -CCGCCGGgUGUGUG------UGCC-GCa-CUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 51920 | 0.72 | 0.590154 |
Target: 5'- aGCGGCCUGCAC-CGCagguacucaGGCaGUGugGGa -3' miRNA: 3'- cCGCCGGGUGUGuGUG---------CCG-CACugCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 230015 | 0.72 | 0.599685 |
Target: 5'- cGGgGGCCCGCGCGCACuca--GACGGc -3' miRNA: 3'- -CCgCCGGGUGUGUGUGccgcaCUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 141633 | 0.71 | 0.609236 |
Target: 5'- uGGCGGCUCgGCgACGgAgGGCGgUGGCGGu -3' miRNA: 3'- -CCGCCGGG-UG-UGUgUgCCGC-ACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 128588 | 0.71 | 0.617844 |
Target: 5'- cGGCGGCgaaggcgcauCCGCACGCgccagccgcccccACGGuCGuUGGCGGa -3' miRNA: 3'- -CCGCCG----------GGUGUGUG-------------UGCC-GC-ACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 46059 | 0.71 | 0.618802 |
Target: 5'- uGGCGGUCCGCGucaaACACaGGC-UGACGa -3' miRNA: 3'- -CCGCCGGGUGUg---UGUG-CCGcACUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 30123 | 0.71 | 0.628377 |
Target: 5'- cGGCGGCCUGgGgaGgGCGG-GUGGCGGa -3' miRNA: 3'- -CCGCCGGGUgUg-UgUGCCgCACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 187989 | 0.71 | 0.628377 |
Target: 5'- uGCGGCCgCGCGCaACAUGGCuc-GCGGa -3' miRNA: 3'- cCGCCGG-GUGUG-UGUGCCGcacUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 200892 | 0.71 | 0.637954 |
Target: 5'- cGGCuGCCCGuCGCGCugGGCGac-CGGc -3' miRNA: 3'- -CCGcCGGGU-GUGUGugCCGCacuGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 68652 | 0.71 | 0.637954 |
Target: 5'- aGGCGGCCgaggcgUACGCGCAguCGGCGU-ACGa -3' miRNA: 3'- -CCGCCGG------GUGUGUGU--GCCGCAcUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 24829 | 0.71 | 0.647528 |
Target: 5'- gGGUGGUggagACGCACGCGGCGcccgauguUGGCGGc -3' miRNA: 3'- -CCGCCGgg--UGUGUGUGCCGC--------ACUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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