miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 78495 0.71 0.651354
Target:  5'- uGCGGCCCuugccgccguccaggGCGCGgAUGGCGaUGuCGGa -3'
miRNA:   3'- cCGCCGGG---------------UGUGUgUGCCGC-ACuGCC- -5'
15878 5' -59.4 NC_004065.1 + 118041 0.71 0.65709
Target:  5'- aGGCGGCCCccucgaGCGCcuucauCGCGGCcgGUGACu- -3'
miRNA:   3'- -CCGCCGGG------UGUGu-----GUGCCG--CACUGcc -5'
15878 5' -59.4 NC_004065.1 + 47844 0.71 0.65709
Target:  5'- aGCGGCCCuCAugaugUugGCGGCGUcguaGugGGa -3'
miRNA:   3'- cCGCCGGGuGU-----GugUGCCGCA----CugCC- -5'
15878 5' -59.4 NC_004065.1 + 157955 0.7 0.666636
Target:  5'- gGGUGGCguCCACcgGCugGGuCGUGAUGGc -3'
miRNA:   3'- -CCGCCG--GGUGugUGugCC-GCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 128424 0.7 0.666636
Target:  5'- cGGCGGCgCCGcCACcgagucugaGCGCGGCGgaGGCGu -3'
miRNA:   3'- -CCGCCG-GGU-GUG---------UGUGCCGCa-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 31089 0.7 0.676156
Target:  5'- cGGCGGCCUugGCcgcCAgGGUGgaGCGGg -3'
miRNA:   3'- -CCGCCGGGugUGu--GUgCCGCacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 43147 0.7 0.685646
Target:  5'- cGCGGaagaCACGCGCACGGac-GGCGGg -3'
miRNA:   3'- cCGCCgg--GUGUGUGUGCCgcaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 125065 0.7 0.685646
Target:  5'- cGCaGGUCCGCGC-CACGaaccGUGUGAUGGa -3'
miRNA:   3'- cCG-CCGGGUGUGuGUGC----CGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 125 0.7 0.694153
Target:  5'- aGGUGGCUgCGCGCACgucaccgAgGGCGUGGCa- -3'
miRNA:   3'- -CCGCCGG-GUGUGUG-------UgCCGCACUGcc -5'
15878 5' -59.4 NC_004065.1 + 138821 0.7 0.694153
Target:  5'- cGGCGGCgccgaugCCGCGCACgccgACGGCGcuuccGCGGc -3'
miRNA:   3'- -CCGCCG-------GGUGUGUG----UGCCGCac---UGCC- -5'
15878 5' -59.4 NC_004065.1 + 140442 0.7 0.695096
Target:  5'- cGCGGCUguUGC-CGCGGCcgaaguaagGUGACGGg -3'
miRNA:   3'- cCGCCGGguGUGuGUGCCG---------CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 59716 0.7 0.695096
Target:  5'- aGCGGCC-GCgGCGCACGGCGaccgucGCGGa -3'
miRNA:   3'- cCGCCGGgUG-UGUGUGCCGCac----UGCC- -5'
15878 5' -59.4 NC_004065.1 + 92522 0.7 0.695096
Target:  5'- cGGUGcCUCGCGCGCGCguacgGGCG-GGCGGg -3'
miRNA:   3'- -CCGCcGGGUGUGUGUG-----CCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 103779 0.7 0.7045
Target:  5'- gGGCGGCUCGaucccCGCACGgGCGUGAa-- -3'
miRNA:   3'- -CCGCCGGGUgu---GUGUGC-CGCACUgcc -5'
15878 5' -59.4 NC_004065.1 + 120466 0.7 0.712919
Target:  5'- aGGCGGCCaccucgagguCGCugACgACGGUGUcgugcccgggguaGACGGu -3'
miRNA:   3'- -CCGCCGG----------GUGugUG-UGCCGCA-------------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 66626 0.7 0.713851
Target:  5'- cGCGGgCUGCG-GCGCuGCGUGGCGGa -3'
miRNA:   3'- cCGCCgGGUGUgUGUGcCGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 79330 0.69 0.723141
Target:  5'- cGGCGGUUCGUGCGCGCGGag-GACGa -3'
miRNA:   3'- -CCGCCGGGUGUGUGUGCCgcaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 108788 0.69 0.723141
Target:  5'- uGGCGGCgUCGa--ACcUGGCGUGGCGGc -3'
miRNA:   3'- -CCGCCG-GGUgugUGuGCCGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 102028 0.69 0.731444
Target:  5'- cGGCGGgCCACcucggugACcCGCGGCGgccgGGCGu -3'
miRNA:   3'- -CCGCCgGGUG-------UGuGUGCCGCa---CUGCc -5'
15878 5' -59.4 NC_004065.1 + 124723 0.69 0.732363
Target:  5'- aGGUucaGGCCCGCGcCGCACG-CGUGguguucagcacgGCGGg -3'
miRNA:   3'- -CCG---CCGGGUGU-GUGUGCcGCAC------------UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.