miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 63057 0.69 0.73603
Target:  5'- gGGCGGCgCAguCGCAggagucgccggucgcCGGCGagcGACGGg -3'
miRNA:   3'- -CCGCCGgGUguGUGU---------------GCCGCa--CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 135574 0.69 0.73603
Target:  5'- aGGCGGCCgucaccuccuucgaaCACACGCGCcGCuGggaGACGGc -3'
miRNA:   3'- -CCGCCGG---------------GUGUGUGUGcCG-Ca--CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 146543 0.69 0.741508
Target:  5'- uGGuCGGCCUGCccgACAUcguCGGCGUcGCGGg -3'
miRNA:   3'- -CC-GCCGGGUG---UGUGu--GCCGCAcUGCC- -5'
15878 5' -59.4 NC_004065.1 + 82519 0.69 0.741508
Target:  5'- cGGUGGCCCcgaACAUGCGGa-UGACGu -3'
miRNA:   3'- -CCGCCGGGug-UGUGUGCCgcACUGCc -5'
15878 5' -59.4 NC_004065.1 + 99543 0.69 0.741508
Target:  5'- cGGCGcuCCCGucuCGC-CGCGGCG-GACGGc -3'
miRNA:   3'- -CCGCc-GGGU---GUGuGUGCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 146872 0.69 0.741508
Target:  5'- cGGCGcGUgaACGCGgGCGGCaGUGACGa -3'
miRNA:   3'- -CCGC-CGggUGUGUgUGCCG-CACUGCc -5'
15878 5' -59.4 NC_004065.1 + 129898 0.69 0.741508
Target:  5'- cGGCGGaCCCugAU-CGgGGCcUGGCGGc -3'
miRNA:   3'- -CCGCC-GGGugUGuGUgCCGcACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 195026 0.69 0.748764
Target:  5'- aGCGGCCgCGCucguccaugaccaggGCGCACGGCGUcucucugaagugcagGuCGGg -3'
miRNA:   3'- cCGCCGG-GUG---------------UGUGUGCCGCA---------------CuGCC- -5'
15878 5' -59.4 NC_004065.1 + 79244 0.69 0.750569
Target:  5'- aGCGGaUCACGCugACGGCGcGAUGu -3'
miRNA:   3'- cCGCCgGGUGUGugUGCCGCaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 79612 0.69 0.750569
Target:  5'- aGGcCGGaCCCgcuGCGCGCGCGGaCGcuGCGGg -3'
miRNA:   3'- -CC-GCC-GGG---UGUGUGUGCC-GCacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 209566 0.69 0.750569
Target:  5'- aGGCccGGCCgGCuGCugGCgGGCGUG-CGGu -3'
miRNA:   3'- -CCG--CCGGgUG-UGugUG-CCGCACuGCC- -5'
15878 5' -59.4 NC_004065.1 + 188985 0.69 0.750569
Target:  5'- cGCGGCCCGaGCucuGCGGCuucGACGGa -3'
miRNA:   3'- cCGCCGGGUgUGug-UGCCGca-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 196104 0.69 0.750569
Target:  5'- cGCGGCUCGC-CACcgccaACGGCGgguACGGc -3'
miRNA:   3'- cCGCCGGGUGuGUG-----UGCCGCac-UGCC- -5'
15878 5' -59.4 NC_004065.1 + 45521 0.69 0.75954
Target:  5'- cGGaCGGUCUACGcCACcCGGCGccgcGGCGGc -3'
miRNA:   3'- -CC-GCCGGGUGU-GUGuGCCGCa---CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 123022 0.69 0.760432
Target:  5'- uGGCGGCCacguacucgucagggAUGCACGCGGCGaGcAUGGc -3'
miRNA:   3'- -CCGCCGGg--------------UGUGUGUGCCGCaC-UGCC- -5'
15878 5' -59.4 NC_004065.1 + 61253 0.69 0.768412
Target:  5'- aGGCgucgaaGGCCU----GCGCGGCGUcGACGGg -3'
miRNA:   3'- -CCG------CCGGGugugUGUGCCGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 104880 0.69 0.768412
Target:  5'- uGCGGCUgauCGC-CACGCGGCuGggcGACGGc -3'
miRNA:   3'- cCGCCGG---GUGuGUGUGCCG-Ca--CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 117399 0.69 0.768412
Target:  5'- -uCGGCCgCGCGCGCugGGCuc-GCGGc -3'
miRNA:   3'- ccGCCGG-GUGUGUGugCCGcacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 61687 0.69 0.768412
Target:  5'- aGgGGUCCGCAgCGCgucacguccGCGGCGUagcGGCGGa -3'
miRNA:   3'- cCgCCGGGUGU-GUG---------UGCCGCA---CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 125444 0.69 0.768412
Target:  5'- gGGCaGGuuaCCCACcaugAUGCGCGGCGUGcacaGCGGc -3'
miRNA:   3'- -CCG-CC---GGGUG----UGUGUGCCGCAC----UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.