Results 21 - 40 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 104782 | 0.66 | 0.891246 |
Target: 5'- cGGCGGCCUcgagACGgGCAuCGaGCugGUGACGc -3' miRNA: 3'- -CCGCCGGG----UGUgUGU-GC-CG--CACUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 207992 | 0.66 | 0.891246 |
Target: 5'- cGCGGCCUGC-C-CGgGGCcGUGGcCGGg -3' miRNA: 3'- cCGCCGGGUGuGuGUgCCG-CACU-GCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 149648 | 0.66 | 0.891246 |
Target: 5'- cGGCaGGCCCuGCACGCGCcgcagcGCGUuGACc- -3' miRNA: 3'- -CCG-CCGGG-UGUGUGUGc-----CGCA-CUGcc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 38449 | 0.66 | 0.891246 |
Target: 5'- cGGCaggaGGCUCAUcgGCACACuGGUG-GugGGc -3' miRNA: 3'- -CCG----CCGGGUG--UGUGUG-CCGCaCugCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 219625 | 0.66 | 0.890617 |
Target: 5'- uGGUGGUaaaaugaCCGCGCACACGcGCGagGuACGa -3' miRNA: 3'- -CCGCCG-------GGUGUGUGUGC-CGCa-C-UGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 120559 | 0.66 | 0.884865 |
Target: 5'- cGGCGGUCgGCGCGa---GCG-GGCGGg -3' miRNA: 3'- -CCGCCGGgUGUGUgugcCGCaCUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 225048 | 0.66 | 0.884865 |
Target: 5'- uGaaGCCCGaGCGCACGuCGUGAUGGc -3' miRNA: 3'- cCgcCGGGUgUGUGUGCcGCACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 16848 | 0.66 | 0.884865 |
Target: 5'- cGCaGUUCugcGCACGCACGGCGagGGCGa -3' miRNA: 3'- cCGcCGGG---UGUGUGUGCCGCa-CUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 110592 | 0.66 | 0.884865 |
Target: 5'- cGGCGaccaCCACGCGCACGGggaugaagacCGUcaggauGACGGu -3' miRNA: 3'- -CCGCcg--GGUGUGUGUGCC----------GCA------CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 98638 | 0.66 | 0.884865 |
Target: 5'- cGGUGcGCUCGgucgcucguacgUACGCGCGGUugcUGACGGg -3' miRNA: 3'- -CCGC-CGGGU------------GUGUGUGCCGc--ACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 198026 | 0.66 | 0.884865 |
Target: 5'- aGGCGGUCgCGguCGC-CGGCGguuccaagggGAUGGa -3' miRNA: 3'- -CCGCCGG-GUguGUGuGCCGCa---------CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 1 | 0.66 | 0.884865 |
Target: 5'- --gGGCCCGCGCGCacucagACGGCcggGGgGGa -3' miRNA: 3'- ccgCCGGGUGUGUG------UGCCGca-CUgCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 88385 | 0.66 | 0.884865 |
Target: 5'- uGGCGGUgUAgGCcaGCugGcGCGUGAUGa -3' miRNA: 3'- -CCGCCGgGUgUG--UGugC-CGCACUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 77835 | 0.66 | 0.884865 |
Target: 5'- cGGaaccaGGCUC-CGgACGCGGCGUGGgcucccCGGu -3' miRNA: 3'- -CCg----CCGGGuGUgUGUGCCGCACU------GCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 70480 | 0.66 | 0.884865 |
Target: 5'- cGGCGGCguUCAgGgACACcgugaaGGCGaUGGCGGc -3' miRNA: 3'- -CCGCCG--GGUgUgUGUG------CCGC-ACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 222180 | 0.66 | 0.878288 |
Target: 5'- uGCGGCCCu--C-CAUGGC-UGAUGGu -3' miRNA: 3'- cCGCCGGGuguGuGUGCCGcACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 161803 | 0.66 | 0.878288 |
Target: 5'- cGGgGGCUgGauggGCGCAUGGaCGgacgGACGGg -3' miRNA: 3'- -CCgCCGGgUg---UGUGUGCC-GCa---CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 176235 | 0.66 | 0.878288 |
Target: 5'- cGGCGGaCCGCGCagaccuGCugGGCuc-GCGGa -3' miRNA: 3'- -CCGCCgGGUGUG------UGugCCGcacUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 219847 | 0.66 | 0.878288 |
Target: 5'- cGGUGGCCUgucgggugACGgGCugGGauCGUGAUGa -3' miRNA: 3'- -CCGCCGGG--------UGUgUGugCC--GCACUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 188652 | 0.66 | 0.878288 |
Target: 5'- cGauGUCCGCucgaggGCGCGCGGCGggagacGACGGu -3' miRNA: 3'- cCgcCGGGUG------UGUGUGCCGCa-----CUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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