miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 161803 0.66 0.878288
Target:  5'- cGGgGGCUgGauggGCGCAUGGaCGgacgGACGGg -3'
miRNA:   3'- -CCgCCGGgUg---UGUGUGCC-GCa---CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 176235 0.66 0.878288
Target:  5'- cGGCGGaCCGCGCagaccuGCugGGCuc-GCGGa -3'
miRNA:   3'- -CCGCCgGGUGUG------UGugCCGcacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 881 0.66 0.871519
Target:  5'- gGGCGcCCCGCcgGCAUGCuacaGGCGUuACGGg -3'
miRNA:   3'- -CCGCcGGGUG--UGUGUG----CCGCAcUGCC- -5'
15878 5' -59.4 NC_004065.1 + 148850 0.66 0.871519
Target:  5'- aGGCGG-CCGC-CGCGaucgaggaGGCGgcGGCGGg -3'
miRNA:   3'- -CCGCCgGGUGuGUGUg-------CCGCa-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 26451 0.66 0.871519
Target:  5'- uGCGGUaCGCAUACACguuGGUGgucGACGGc -3'
miRNA:   3'- cCGCCGgGUGUGUGUG---CCGCa--CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 200319 0.66 0.871519
Target:  5'- gGGCGGCguCCGC-CGCucgacCGGCGaUGACa- -3'
miRNA:   3'- -CCGCCG--GGUGuGUGu----GCCGC-ACUGcc -5'
15878 5' -59.4 NC_004065.1 + 208955 0.66 0.871519
Target:  5'- uGUccCCUACGgACACGGUGUGGCGa -3'
miRNA:   3'- cCGccGGGUGUgUGUGCCGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 173872 0.66 0.871519
Target:  5'- aGGC-GCCguCACGC-CGuGUGUGugGGc -3'
miRNA:   3'- -CCGcCGGguGUGUGuGC-CGCACugCC- -5'
15878 5' -59.4 NC_004065.1 + 168618 0.66 0.871519
Target:  5'- aGCGGCUgCugGCGCugGugccGCG-GGCGGa -3'
miRNA:   3'- cCGCCGG-GugUGUGugC----CGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 130647 0.66 0.871519
Target:  5'- aGGCaGCCCACGCccgucaugcccaACGuCGGCaUGAuCGGc -3'
miRNA:   3'- -CCGcCGGGUGUG------------UGU-GCCGcACU-GCC- -5'
15878 5' -59.4 NC_004065.1 + 33794 0.66 0.870832
Target:  5'- -uCGGCCCG-ACAUGCGGaCGUGggacgacGCGGa -3'
miRNA:   3'- ccGCCGGGUgUGUGUGCC-GCAC-------UGCC- -5'
15878 5' -59.4 NC_004065.1 + 166165 0.67 0.864562
Target:  5'- uGGUGGUCCuuCGCgaACGCGGCcaUGGCGa -3'
miRNA:   3'- -CCGCCGGGu-GUG--UGUGCCGc-ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 131316 0.67 0.864562
Target:  5'- aGGUGGUCgAgAaGCugGGCGUccccauGACGGg -3'
miRNA:   3'- -CCGCCGGgUgUgUGugCCGCA------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 115786 0.67 0.864562
Target:  5'- uGGCGGUCC-CGgGCACGGaaacuGCGGc -3'
miRNA:   3'- -CCGCCGGGuGUgUGUGCCgcac-UGCC- -5'
15878 5' -59.4 NC_004065.1 + 166524 0.67 0.864562
Target:  5'- gGGCGaGgCCAUccgcaccuggcuGCGCgACGGCGccUGGCGGc -3'
miRNA:   3'- -CCGC-CgGGUG------------UGUG-UGCCGC--ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 172108 0.67 0.857422
Target:  5'- aGGCGGCUCugAC-CGCGGUGgcuACu- -3'
miRNA:   3'- -CCGCCGGGugUGuGUGCCGCac-UGcc -5'
15878 5' -59.4 NC_004065.1 + 97933 0.67 0.857422
Target:  5'- cGCGcGUCCG-GCAC-CGGCGUGGCa- -3'
miRNA:   3'- cCGC-CGGGUgUGUGuGCCGCACUGcc -5'
15878 5' -59.4 NC_004065.1 + 121471 0.67 0.857422
Target:  5'- aGGuCGGUCgGCGCGucCGCgGGCGUGAaGGu -3'
miRNA:   3'- -CC-GCCGGgUGUGU--GUG-CCGCACUgCC- -5'
15878 5' -59.4 NC_004065.1 + 164764 0.67 0.857422
Target:  5'- --aGGCCCAgACcuCACGGag-GACGGg -3'
miRNA:   3'- ccgCCGGGUgUGu-GUGCCgcaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 77391 0.67 0.857422
Target:  5'- uGGUGgagaacaucacGCUgGCGCACAUGGCgGUGAccCGGg -3'
miRNA:   3'- -CCGC-----------CGGgUGUGUGUGCCG-CACU--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.