miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 97933 0.67 0.857422
Target:  5'- cGCGcGUCCG-GCAC-CGGCGUGGCa- -3'
miRNA:   3'- cCGC-CGGGUgUGUGuGCCGCACUGcc -5'
15878 5' -59.4 NC_004065.1 + 41408 0.67 0.857422
Target:  5'- cGCcGCCgGCG-ACACGGUcgccGUGACGGa -3'
miRNA:   3'- cCGcCGGgUGUgUGUGCCG----CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 200966 0.67 0.850103
Target:  5'- cGGCGGCuCCAgGau--CGGUgcgugGUGACGGg -3'
miRNA:   3'- -CCGCCG-GGUgUguguGCCG-----CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 60683 0.67 0.850103
Target:  5'- -aCGGCCCAC---CAgGGCGaGACGGu -3'
miRNA:   3'- ccGCCGGGUGuguGUgCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 112301 0.67 0.842611
Target:  5'- cGGUGcGCgCGCGagagACGCGaGgGUGACGGg -3'
miRNA:   3'- -CCGC-CGgGUGUg---UGUGC-CgCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 6913 0.67 0.842611
Target:  5'- cGGCGGCUUcagcuGCGgGCACGGCcucGGCGu -3'
miRNA:   3'- -CCGCCGGG-----UGUgUGUGCCGca-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 131414 0.67 0.842611
Target:  5'- aGGCGGCgaaaCCAUGCuGCGgacCGGCGUcaagaGACGGc -3'
miRNA:   3'- -CCGCCG----GGUGUG-UGU---GCCGCA-----CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 165885 0.67 0.842611
Target:  5'- aGGCGaGgCCGCACGCGCuGCcgucGUGguACGGa -3'
miRNA:   3'- -CCGC-CgGGUGUGUGUGcCG----CAC--UGCC- -5'
15878 5' -59.4 NC_004065.1 + 222638 0.67 0.842611
Target:  5'- cGGuCGGCCCuuUACAUACucaccgcaGGUGUgGGCGGu -3'
miRNA:   3'- -CC-GCCGGGu-GUGUGUG--------CCGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 136635 0.67 0.842611
Target:  5'- cGGCGGUCCGgA---GCGGCGUGGauccUGGu -3'
miRNA:   3'- -CCGCCGGGUgUgugUGCCGCACU----GCC- -5'
15878 5' -59.4 NC_004065.1 + 58603 0.67 0.842611
Target:  5'- cGGCGGagucgagaUCgACGCGCGCGGCGgagucGcCGGu -3'
miRNA:   3'- -CCGCC--------GGgUGUGUGUGCCGCa----CuGCC- -5'
15878 5' -59.4 NC_004065.1 + 76738 0.67 0.834952
Target:  5'- cGGCGGgg-ACGgGCGCGGCGccGGCGGc -3'
miRNA:   3'- -CCGCCgggUGUgUGUGCCGCa-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 94405 0.67 0.834952
Target:  5'- uGGUGGCgCCGUAgAC-CcGCGUGACGGc -3'
miRNA:   3'- -CCGCCG-GGUGUgUGuGcCGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 168162 0.67 0.834952
Target:  5'- aGCaGGCCCuucCGCGCGgGGCGcGACa- -3'
miRNA:   3'- cCG-CCGGGu--GUGUGUgCCGCaCUGcc -5'
15878 5' -59.4 NC_004065.1 + 66586 0.67 0.834952
Target:  5'- aGUGGCCgAC-UGCACGGCG--GCGGc -3'
miRNA:   3'- cCGCCGGgUGuGUGUGCCGCacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 52658 0.67 0.82713
Target:  5'- -uUGGCCgC-CGCugGCGGUggcgGUGGCGGa -3'
miRNA:   3'- ccGCCGG-GuGUGugUGCCG----CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 186549 0.67 0.82713
Target:  5'- cGGCGGCgCCGaggACACgugcuGCGGCG-GAUGa -3'
miRNA:   3'- -CCGCCG-GGUg--UGUG-----UGCCGCaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 197478 0.67 0.82713
Target:  5'- cGGCGGa-UAC-CGC-CGGCGcGACGGg -3'
miRNA:   3'- -CCGCCggGUGuGUGuGCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 81449 0.67 0.82713
Target:  5'- cGGCaccaGGCCC-CGCACGgGGC-UGAccCGGa -3'
miRNA:   3'- -CCG----CCGGGuGUGUGUgCCGcACU--GCC- -5'
15878 5' -59.4 NC_004065.1 + 69292 0.67 0.82713
Target:  5'- aGGCGcGCgUACGUGCA-GGCGgUGACGGg -3'
miRNA:   3'- -CCGC-CGgGUGUGUGUgCCGC-ACUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.