miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 183906 0.67 0.82634
Target:  5'- aGGU-GCgCCACGCugAUGGUGUaacagauGACGGg -3'
miRNA:   3'- -CCGcCG-GGUGUGugUGCCGCA-------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 26041 0.68 0.819154
Target:  5'- aGCGGCUC--GCACGCGGCGUcGAa-- -3'
miRNA:   3'- cCGCCGGGugUGUGUGCCGCA-CUgcc -5'
15878 5' -59.4 NC_004065.1 + 121411 0.68 0.819154
Target:  5'- aGCuGCCCGC-CGgACGGCGgcuucagcgGAUGGg -3'
miRNA:   3'- cCGcCGGGUGuGUgUGCCGCa--------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 106341 0.68 0.819154
Target:  5'- gGGCGGCCCgGCGCugcuGCACGGgcagcgcgccaCGUG-CGa -3'
miRNA:   3'- -CCGCCGGG-UGUG----UGUGCC-----------GCACuGCc -5'
15878 5' -59.4 NC_004065.1 + 39185 0.68 0.819154
Target:  5'- cGGCGGCgugguuauuUCuCGCGCACGGUGUcGCGu -3'
miRNA:   3'- -CCGCCG---------GGuGUGUGUGCCGCAcUGCc -5'
15878 5' -59.4 NC_004065.1 + 113916 0.68 0.817541
Target:  5'- gGGCGGagaUCGCGCgugucgacgACGCGGCGcucgggggcuggGACGGa -3'
miRNA:   3'- -CCGCCg--GGUGUG---------UGUGCCGCa-----------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 76531 0.68 0.814297
Target:  5'- cGGCGGCguguucgcaCCugucgcaccccccguACACAUgccgcagaaaaGCGGCGUGACGu -3'
miRNA:   3'- -CCGCCG---------GG---------------UGUGUG-----------UGCCGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 30015 0.68 0.802762
Target:  5'- cGCGaCCguCACcgGCGCGGUGgUGACGGg -3'
miRNA:   3'- cCGCcGGguGUG--UGUGCCGC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 24128 0.68 0.802762
Target:  5'- cGGCGGCCCAUcCGuCAagGGCGacGACGu -3'
miRNA:   3'- -CCGCCGGGUGuGU-GUg-CCGCa-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 105372 0.68 0.802762
Target:  5'- cGGCGGaCCCGgacuCGCugACGGCc-GGCGa -3'
miRNA:   3'- -CCGCC-GGGU----GUGugUGCCGcaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 114021 0.68 0.802762
Target:  5'- aGCuGCCCccgcgGCGCACGuCGGCG-GACGa -3'
miRNA:   3'- cCGcCGGG-----UGUGUGU-GCCGCaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 122504 0.68 0.802762
Target:  5'- gGGCGGUcgCCGCGCGCACcuccuCGUGcgaGCGGu -3'
miRNA:   3'- -CCGCCG--GGUGUGUGUGcc---GCAC---UGCC- -5'
15878 5' -59.4 NC_004065.1 + 104922 0.68 0.801928
Target:  5'- cGGCGGCguacacgcacuaCCGCAaccugcuguccauCACACGGUucGUGGCGcGg -3'
miRNA:   3'- -CCGCCG------------GGUGU-------------GUGUGCCG--CACUGC-C- -5'
15878 5' -59.4 NC_004065.1 + 15425 0.68 0.797736
Target:  5'- cGGuCGGCUCAauUACACgggagGCGGCuuuuaucuggaagccGUGACGGa -3'
miRNA:   3'- -CC-GCCGGGU--GUGUG-----UGCCG---------------CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 102506 0.68 0.79436
Target:  5'- cGgGGCCCAUgaGCAgGCGGCagagGACGa -3'
miRNA:   3'- cCgCCGGGUG--UGUgUGCCGca--CUGCc -5'
15878 5' -59.4 NC_004065.1 + 5205 0.68 0.79436
Target:  5'- aGCGGCUCAUAaauCGCGGCGaccggUGAUGa -3'
miRNA:   3'- cCGCCGGGUGUgu-GUGCCGC-----ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 187391 0.68 0.79436
Target:  5'- aGCuGGCgCGCG-GCGCGGUGUGGCGu -3'
miRNA:   3'- cCG-CCGgGUGUgUGUGCCGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 66282 0.68 0.789256
Target:  5'- uGGUGGCCCugcccgaguucacggACACGCugcggaagaucGCGGCGgacaacGCGGa -3'
miRNA:   3'- -CCGCCGGG---------------UGUGUG-----------UGCCGCac----UGCC- -5'
15878 5' -59.4 NC_004065.1 + 112628 0.68 0.785829
Target:  5'- cGCGaGCCCAgCGCGCGCGGCcgaGCGu -3'
miRNA:   3'- cCGC-CGGGU-GUGUGUGCCGcacUGCc -5'
15878 5' -59.4 NC_004065.1 + 130475 0.68 0.785829
Target:  5'- -aCGGCCgucCGC-CGCGGCGaGACGGg -3'
miRNA:   3'- ccGCCGGgu-GUGuGUGCCGCaCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.