miRNA display CGI


Results 101 - 120 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 78670 0.68 0.785829
Target:  5'- aGCGGCCgGCGC-CGCGGCGcccgagaGCGa -3'
miRNA:   3'- cCGCCGGgUGUGuGUGCCGCac-----UGCc -5'
15878 5' -59.4 NC_004065.1 + 200522 0.68 0.784969
Target:  5'- -uCGGaucgCCGCGCACAgGGCGUccauggcgagggcGACGGg -3'
miRNA:   3'- ccGCCg---GGUGUGUGUgCCGCA-------------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 162902 0.68 0.777177
Target:  5'- aGGCGcGCgCCGCuguccaGCACGGCGUccagcGACGu -3'
miRNA:   3'- -CCGC-CG-GGUGug----UGUGCCGCA-----CUGCc -5'
15878 5' -59.4 NC_004065.1 + 124193 0.68 0.777177
Target:  5'- aGGCcGCCgaguaGCACGagaACGGCGUG-CGGu -3'
miRNA:   3'- -CCGcCGGg----UGUGUg--UGCCGCACuGCC- -5'
15878 5' -59.4 NC_004065.1 + 196363 0.68 0.777177
Target:  5'- aGCGGCCCucCcCGCGCGcCG-GACGGu -3'
miRNA:   3'- cCGCCGGGu-GuGUGUGCcGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 171702 0.68 0.777177
Target:  5'- aGCuGGCCUGCACGC-UGcGCGUcauGACGGa -3'
miRNA:   3'- cCG-CCGGGUGUGUGuGC-CGCA---CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 127223 0.68 0.777177
Target:  5'- cGGCGGCCgCGaggauCGgGCGCGGU--GGCGGg -3'
miRNA:   3'- -CCGCCGG-GU-----GUgUGUGCCGcaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 31471 0.68 0.777177
Target:  5'- aGCGGUCCGugcCGCGCGCGGaccugGUG-CGGc -3'
miRNA:   3'- cCGCCGGGU---GUGUGUGCCg----CACuGCC- -5'
15878 5' -59.4 NC_004065.1 + 142479 0.68 0.777177
Target:  5'- gGGCGGUggACGCGagcCAgGGgGUGGCGGu -3'
miRNA:   3'- -CCGCCGggUGUGU---GUgCCgCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 104880 0.69 0.768412
Target:  5'- uGCGGCUgauCGC-CACGCGGCuGggcGACGGc -3'
miRNA:   3'- cCGCCGG---GUGuGUGUGCCG-Ca--CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 61253 0.69 0.768412
Target:  5'- aGGCgucgaaGGCCU----GCGCGGCGUcGACGGg -3'
miRNA:   3'- -CCG------CCGGGugugUGUGCCGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 61687 0.69 0.768412
Target:  5'- aGgGGUCCGCAgCGCgucacguccGCGGCGUagcGGCGGa -3'
miRNA:   3'- cCgCCGGGUGU-GUG---------UGCCGCA---CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 117399 0.69 0.768412
Target:  5'- -uCGGCCgCGCGCGCugGGCuc-GCGGc -3'
miRNA:   3'- ccGCCGG-GUGUGUGugCCGcacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 125444 0.69 0.768412
Target:  5'- gGGCaGGuuaCCCACcaugAUGCGCGGCGUGcacaGCGGc -3'
miRNA:   3'- -CCG-CC---GGGUG----UGUGUGCCGCAC----UGCC- -5'
15878 5' -59.4 NC_004065.1 + 123022 0.69 0.760432
Target:  5'- uGGCGGCCacguacucgucagggAUGCACGCGGCGaGcAUGGc -3'
miRNA:   3'- -CCGCCGGg--------------UGUGUGUGCCGCaC-UGCC- -5'
15878 5' -59.4 NC_004065.1 + 45521 0.69 0.75954
Target:  5'- cGGaCGGUCUACGcCACcCGGCGccgcGGCGGc -3'
miRNA:   3'- -CC-GCCGGGUGU-GUGuGCCGCa---CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 188985 0.69 0.750569
Target:  5'- cGCGGCCCGaGCucuGCGGCuucGACGGa -3'
miRNA:   3'- cCGCCGGGUgUGug-UGCCGca-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 196104 0.69 0.750569
Target:  5'- cGCGGCUCGC-CACcgccaACGGCGgguACGGc -3'
miRNA:   3'- cCGCCGGGUGuGUG-----UGCCGCac-UGCC- -5'
15878 5' -59.4 NC_004065.1 + 209566 0.69 0.750569
Target:  5'- aGGCccGGCCgGCuGCugGCgGGCGUG-CGGu -3'
miRNA:   3'- -CCG--CCGGgUG-UGugUG-CCGCACuGCC- -5'
15878 5' -59.4 NC_004065.1 + 79244 0.69 0.750569
Target:  5'- aGCGGaUCACGCugACGGCGcGAUGu -3'
miRNA:   3'- cCGCCgGGUGUGugUGCCGCaCUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.