miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 1 0.66 0.884865
Target:  5'- --gGGCCCGCGCGCacucagACGGCcggGGgGGa -3'
miRNA:   3'- ccgCCGGGUGUGUG------UGCCGca-CUgCC- -5'
15878 5' -59.4 NC_004065.1 + 125 0.7 0.694153
Target:  5'- aGGUGGCUgCGCGCACgucaccgAgGGCGUGGCa- -3'
miRNA:   3'- -CCGCCGG-GUGUGUG-------UgCCGCACUGcc -5'
15878 5' -59.4 NC_004065.1 + 307 0.66 0.891246
Target:  5'- cGCGcGCCCGCgagACGugUACGGCGUGGg-- -3'
miRNA:   3'- cCGC-CGGGUG---UGU--GUGCCGCACUgcc -5'
15878 5' -59.4 NC_004065.1 + 881 0.66 0.871519
Target:  5'- gGGCGcCCCGCcgGCAUGCuacaGGCGUuACGGg -3'
miRNA:   3'- -CCGCcGGGUG--UGUGUG----CCGCAcUGCC- -5'
15878 5' -59.4 NC_004065.1 + 5205 0.68 0.79436
Target:  5'- aGCGGCUCAUAaauCGCGGCGaccggUGAUGa -3'
miRNA:   3'- cCGCCGGGUGUgu-GUGCCGC-----ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 6913 0.67 0.842611
Target:  5'- cGGCGGCUUcagcuGCGgGCACGGCcucGGCGu -3'
miRNA:   3'- -CCGCCGGG-----UGUgUGUGCCGca-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 15425 0.68 0.797736
Target:  5'- cGGuCGGCUCAauUACACgggagGCGGCuuuuaucuggaagccGUGACGGa -3'
miRNA:   3'- -CC-GCCGGGU--GUGUG-----UGCCG---------------CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 16848 0.66 0.884865
Target:  5'- cGCaGUUCugcGCACGCACGGCGagGGCGa -3'
miRNA:   3'- cCGcCGGG---UGUGUGUGCCGCa-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 20700 0.66 0.897428
Target:  5'- gGGCaGUCCccaguaGCACACgACGGCaccGACGGc -3'
miRNA:   3'- -CCGcCGGG------UGUGUG-UGCCGca-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 22077 0.76 0.369741
Target:  5'- cGGCGGCCCAaccCGCGCGCuccgaagaucauauGcGCGUcGACGGg -3'
miRNA:   3'- -CCGCCGGGU---GUGUGUG--------------C-CGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 24128 0.68 0.802762
Target:  5'- cGGCGGCCCAUcCGuCAagGGCGacGACGu -3'
miRNA:   3'- -CCGCCGGGUGuGU-GUg-CCGCa-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 24829 0.71 0.647528
Target:  5'- gGGUGGUggagACGCACGCGGCGcccgauguUGGCGGc -3'
miRNA:   3'- -CCGCCGgg--UGUGUGUGCCGC--------ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 26041 0.68 0.819154
Target:  5'- aGCGGCUC--GCACGCGGCGUcGAa-- -3'
miRNA:   3'- cCGCCGGGugUGUGUGCCGCA-CUgcc -5'
15878 5' -59.4 NC_004065.1 + 26451 0.66 0.871519
Target:  5'- uGCGGUaCGCAUACACguuGGUGgucGACGGc -3'
miRNA:   3'- cCGCCGgGUGUGUGUG---CCGCa--CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 30015 0.68 0.802762
Target:  5'- cGCGaCCguCACcgGCGCGGUGgUGACGGg -3'
miRNA:   3'- cCGCcGGguGUG--UGUGCCGC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 30123 0.71 0.628377
Target:  5'- cGGCGGCCUGgGgaGgGCGG-GUGGCGGa -3'
miRNA:   3'- -CCGCCGGGUgUg-UgUGCCgCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 30485 0.66 0.891246
Target:  5'- gGGCGcGCCCgGCuggagGCGCcCGGCugcgcgcacGUGGCGGc -3'
miRNA:   3'- -CCGC-CGGG-UG-----UGUGuGCCG---------CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 31089 0.7 0.676156
Target:  5'- cGGCGGCCUugGCcgcCAgGGUGgaGCGGg -3'
miRNA:   3'- -CCGCCGGGugUGu--GUgCCGCacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 31471 0.68 0.777177
Target:  5'- aGCGGUCCGugcCGCGCGCGGaccugGUG-CGGc -3'
miRNA:   3'- cCGCCGGGU---GUGUGUGCCg----CACuGCC- -5'
15878 5' -59.4 NC_004065.1 + 33794 0.66 0.870832
Target:  5'- -uCGGCCCG-ACAUGCGGaCGUGggacgacGCGGa -3'
miRNA:   3'- ccGCCGGGUgUGUGUGCC-GCAC-------UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.