miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 35210 0.72 0.580651
Target:  5'- uGGCGGCCaC-CGC-CACGGCGUucaggggcucGACGa -3'
miRNA:   3'- -CCGCCGG-GuGUGuGUGCCGCA----------CUGCc -5'
15878 5' -59.4 NC_004065.1 + 35572 0.72 0.589203
Target:  5'- aGGCGG-CCACAgGCGgaaucggUGGCGUcGGCGGu -3'
miRNA:   3'- -CCGCCgGGUGUgUGU-------GCCGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 38026 0.66 0.878288
Target:  5'- gGGUGGCCCGCACACcauccuGCuGGCcc-ACGa -3'
miRNA:   3'- -CCGCCGGGUGUGUG------UG-CCGcacUGCc -5'
15878 5' -59.4 NC_004065.1 + 38449 0.66 0.891246
Target:  5'- cGGCaggaGGCUCAUcgGCACACuGGUG-GugGGc -3'
miRNA:   3'- -CCG----CCGGGUG--UGUGUG-CCGCaCugCC- -5'
15878 5' -59.4 NC_004065.1 + 38755 0.72 0.580651
Target:  5'- cGGCGuGCCCGCGaguaccguuucCACACcgGGC-UGACGGu -3'
miRNA:   3'- -CCGC-CGGGUGU-----------GUGUG--CCGcACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 39185 0.68 0.819154
Target:  5'- cGGCGGCgugguuauuUCuCGCGCACGGUGUcGCGu -3'
miRNA:   3'- -CCGCCG---------GGuGUGUGUGCCGCAcUGCc -5'
15878 5' -59.4 NC_004065.1 + 41408 0.67 0.857422
Target:  5'- cGCcGCCgGCG-ACACGGUcgccGUGACGGa -3'
miRNA:   3'- cCGcCGGgUGUgUGUGCCG----CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 43147 0.7 0.685646
Target:  5'- cGCGGaagaCACGCGCACGGac-GGCGGg -3'
miRNA:   3'- cCGCCgg--GUGUGUGUGCCgcaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 45521 0.69 0.75954
Target:  5'- cGGaCGGUCUACGcCACcCGGCGccgcGGCGGc -3'
miRNA:   3'- -CC-GCCGGGUGU-GUGuGCCGCa---CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 45804 0.72 0.552356
Target:  5'- gGGCuGGCgCCACACGcCGCGuGCGgGugGGc -3'
miRNA:   3'- -CCG-CCG-GGUGUGU-GUGC-CGCaCugCC- -5'
15878 5' -59.4 NC_004065.1 + 46059 0.71 0.618802
Target:  5'- uGGCGGUCCGCGucaaACACaGGC-UGACGa -3'
miRNA:   3'- -CCGCCGGGUGUg---UGUG-CCGcACUGCc -5'
15878 5' -59.4 NC_004065.1 + 46170 0.74 0.470521
Target:  5'- cGGCcacGGCCaaACACGCgACGGCGUGGgGGc -3'
miRNA:   3'- -CCG---CCGGg-UGUGUG-UGCCGCACUgCC- -5'
15878 5' -59.4 NC_004065.1 + 47844 0.71 0.65709
Target:  5'- aGCGGCCCuCAugaugUugGCGGCGUcguaGugGGa -3'
miRNA:   3'- cCGCCGGGuGU-----GugUGCCGCA----CugCC- -5'
15878 5' -59.4 NC_004065.1 + 51920 0.72 0.590154
Target:  5'- aGCGGCCUGCAC-CGCagguacucaGGCaGUGugGGa -3'
miRNA:   3'- cCGCCGGGUGUGuGUG---------CCG-CACugCC- -5'
15878 5' -59.4 NC_004065.1 + 52658 0.67 0.82713
Target:  5'- -uUGGCCgC-CGCugGCGGUggcgGUGGCGGa -3'
miRNA:   3'- ccGCCGG-GuGUGugUGCCG----CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 56146 1.11 0.001963
Target:  5'- cGGCGGCCCACACACACGGCGUGACGGc -3'
miRNA:   3'- -CCGCCGGGUGUGUGUGCCGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 56542 0.66 0.897428
Target:  5'- uGGCGGCgaCAC-CGCA-GGCGcUGAUGa -3'
miRNA:   3'- -CCGCCGg-GUGuGUGUgCCGC-ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 58603 0.67 0.842611
Target:  5'- cGGCGGagucgagaUCgACGCGCGCGGCGgagucGcCGGu -3'
miRNA:   3'- -CCGCC--------GGgUGUGUGUGCCGCa----CuGCC- -5'
15878 5' -59.4 NC_004065.1 + 59716 0.7 0.695096
Target:  5'- aGCGGCC-GCgGCGCACGGCGaccgucGCGGa -3'
miRNA:   3'- cCGCCGGgUG-UGUGUGCCGCac----UGCC- -5'
15878 5' -59.4 NC_004065.1 + 60683 0.67 0.850103
Target:  5'- -aCGGCCCAC---CAgGGCGaGACGGu -3'
miRNA:   3'- ccGCCGGGUGuguGUgCCGCaCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.