miRNA display CGI


Results 41 - 60 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 61253 0.69 0.768412
Target:  5'- aGGCgucgaaGGCCU----GCGCGGCGUcGACGGg -3'
miRNA:   3'- -CCG------CCGGGugugUGUGCCGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 61687 0.69 0.768412
Target:  5'- aGgGGUCCGCAgCGCgucacguccGCGGCGUagcGGCGGa -3'
miRNA:   3'- cCgCCGGGUGU-GUG---------UGCCGCA---CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 62632 0.65 0.902819
Target:  5'- cGCGGCagCagcauugacagcaGCAUugGCGGCGgaGACGGc -3'
miRNA:   3'- cCGCCGg-G-------------UGUGugUGCCGCa-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 63057 0.69 0.73603
Target:  5'- gGGCGGCgCAguCGCAggagucgccggucgcCGGCGagcGACGGg -3'
miRNA:   3'- -CCGCCGgGUguGUGU---------------GCCGCa--CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 66282 0.68 0.789256
Target:  5'- uGGUGGCCCugcccgaguucacggACACGCugcggaagaucGCGGCGgacaacGCGGa -3'
miRNA:   3'- -CCGCCGGG---------------UGUGUG-----------UGCCGCac----UGCC- -5'
15878 5' -59.4 NC_004065.1 + 66586 0.67 0.834952
Target:  5'- aGUGGCCgAC-UGCACGGCG--GCGGc -3'
miRNA:   3'- cCGCCGGgUGuGUGUGCCGCacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 66626 0.7 0.713851
Target:  5'- cGCGGgCUGCG-GCGCuGCGUGGCGGa -3'
miRNA:   3'- cCGCCgGGUGUgUGUGcCGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 67267 0.66 0.891246
Target:  5'- cGCGGCCguuCAacgGCACGGCGgaGACGc -3'
miRNA:   3'- cCGCCGGgu-GUg--UGUGCCGCa-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 67749 0.75 0.427791
Target:  5'- aGCGGCgCCGCGuCcgACGGCGUGACGa -3'
miRNA:   3'- cCGCCG-GGUGU-GugUGCCGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 68652 0.71 0.637954
Target:  5'- aGGCGGCCgaggcgUACGCGCAguCGGCGU-ACGa -3'
miRNA:   3'- -CCGCCGG------GUGUGUGU--GCCGCAcUGCc -5'
15878 5' -59.4 NC_004065.1 + 69292 0.67 0.82713
Target:  5'- aGGCGcGCgUACGUGCA-GGCGgUGACGGg -3'
miRNA:   3'- -CCGC-CGgGUGUGUGUgCCGC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 70480 0.66 0.884865
Target:  5'- cGGCGGCguUCAgGgACACcgugaaGGCGaUGGCGGc -3'
miRNA:   3'- -CCGCCG--GGUgUgUGUG------CCGC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 76531 0.68 0.814297
Target:  5'- cGGCGGCguguucgcaCCugucgcaccccccguACACAUgccgcagaaaaGCGGCGUGACGu -3'
miRNA:   3'- -CCGCCG---------GG---------------UGUGUG-----------UGCCGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 76738 0.67 0.834952
Target:  5'- cGGCGGgg-ACGgGCGCGGCGccGGCGGc -3'
miRNA:   3'- -CCGCCgggUGUgUGUGCCGCa-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 77205 0.72 0.561747
Target:  5'- cGGCGGCgCC-C-CGCACGGCGaUGGCc- -3'
miRNA:   3'- -CCGCCG-GGuGuGUGUGCCGC-ACUGcc -5'
15878 5' -59.4 NC_004065.1 + 77391 0.67 0.857422
Target:  5'- uGGUGgagaacaucacGCUgGCGCACAUGGCgGUGAccCGGg -3'
miRNA:   3'- -CCGC-----------CGGgUGUGUGUGCCG-CACU--GCC- -5'
15878 5' -59.4 NC_004065.1 + 77835 0.66 0.884865
Target:  5'- cGGaaccaGGCUC-CGgACGCGGCGUGGgcucccCGGu -3'
miRNA:   3'- -CCg----CCGGGuGUgUGUGCCGCACU------GCC- -5'
15878 5' -59.4 NC_004065.1 + 78090 0.65 0.90104
Target:  5'- cGCGGaCCCGCuguGCGCGGCuaacaugcgaucGACGGa -3'
miRNA:   3'- cCGCC-GGGUGug-UGUGCCGca----------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 78495 0.71 0.651354
Target:  5'- uGCGGCCCuugccgccguccaggGCGCGgAUGGCGaUGuCGGa -3'
miRNA:   3'- cCGCCGGG---------------UGUGUgUGCCGC-ACuGCC- -5'
15878 5' -59.4 NC_004065.1 + 78670 0.68 0.785829
Target:  5'- aGCGGCCgGCGC-CGCGGCGcccgagaGCGa -3'
miRNA:   3'- cCGCCGGgUGUGuGUGCCGCac-----UGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.