miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 78858 0.72 0.590154
Target:  5'- gGGCGGCCgGCGCGCcagcucGCGGuCGccGACGa -3'
miRNA:   3'- -CCGCCGGgUGUGUG------UGCC-GCa-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 79244 0.69 0.750569
Target:  5'- aGCGGaUCACGCugACGGCGcGAUGu -3'
miRNA:   3'- cCGCCgGGUGUGugUGCCGCaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 79330 0.69 0.723141
Target:  5'- cGGCGGUUCGUGCGCGCGGag-GACGa -3'
miRNA:   3'- -CCGCCGGGUGUGUGUGCCgcaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 79508 0.66 0.897428
Target:  5'- gGGUGGuuCCCAUcgccgagguACGCACGGCcgaGCGGg -3'
miRNA:   3'- -CCGCC--GGGUG---------UGUGUGCCGcacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 79612 0.69 0.750569
Target:  5'- aGGcCGGaCCCgcuGCGCGCGCGGaCGcuGCGGg -3'
miRNA:   3'- -CC-GCC-GGG---UGUGUGUGCC-GCacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 81449 0.67 0.82713
Target:  5'- cGGCaccaGGCCC-CGCACGgGGC-UGAccCGGa -3'
miRNA:   3'- -CCG----CCGGGuGUGUGUgCCGcACU--GCC- -5'
15878 5' -59.4 NC_004065.1 + 82519 0.69 0.741508
Target:  5'- cGGUGGCCCcgaACAUGCGGa-UGACGu -3'
miRNA:   3'- -CCGCCGGGug-UGUGUGCCgcACUGCc -5'
15878 5' -59.4 NC_004065.1 + 88158 0.72 0.560806
Target:  5'- gGGC-GCCCGCuCGCcggacgaGCGGCG-GACGGg -3'
miRNA:   3'- -CCGcCGGGUGuGUG-------UGCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 88385 0.66 0.884865
Target:  5'- uGGCGGUgUAgGCcaGCugGcGCGUGAUGa -3'
miRNA:   3'- -CCGCCGgGUgUG--UGugC-CGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 90025 0.76 0.363715
Target:  5'- cGGCGGCgucagcuCCACGCuCAUGGCGacGGCGGg -3'
miRNA:   3'- -CCGCCG-------GGUGUGuGUGCCGCa-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 92431 0.66 0.891246
Target:  5'- ----cCCCACGCugGCcaaccGCGUGACGGa -3'
miRNA:   3'- ccgccGGGUGUGugUGc----CGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 92522 0.7 0.695096
Target:  5'- cGGUGcCUCGCGCGCGCguacgGGCG-GGCGGg -3'
miRNA:   3'- -CCGCcGGGUGUGUGUG-----CCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 94405 0.67 0.834952
Target:  5'- uGGUGGCgCCGUAgAC-CcGCGUGACGGc -3'
miRNA:   3'- -CCGCCG-GGUGUgUGuGcCGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 96642 0.66 0.897428
Target:  5'- cGGCGG-UCGCGaGCucuuucuCGGCGUcGGCGGg -3'
miRNA:   3'- -CCGCCgGGUGUgUGu------GCCGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 97933 0.67 0.857422
Target:  5'- cGCGcGUCCG-GCAC-CGGCGUGGCa- -3'
miRNA:   3'- cCGC-CGGGUgUGUGuGCCGCACUGcc -5'
15878 5' -59.4 NC_004065.1 + 98265 0.72 0.57118
Target:  5'- cGGCGGCCCuggGCGCGCGCcucGCG-GAucCGGa -3'
miRNA:   3'- -CCGCCGGG---UGUGUGUGc--CGCaCU--GCC- -5'
15878 5' -59.4 NC_004065.1 + 98638 0.66 0.884865
Target:  5'- cGGUGcGCUCGgucgcucguacgUACGCGCGGUugcUGACGGg -3'
miRNA:   3'- -CCGC-CGGGU------------GUGUGUGCCGc--ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 99543 0.69 0.741508
Target:  5'- cGGCGcuCCCGucuCGC-CGCGGCG-GACGGc -3'
miRNA:   3'- -CCGCc-GGGU---GUGuGUGCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 102028 0.69 0.731444
Target:  5'- cGGCGGgCCACcucggugACcCGCGGCGgccgGGCGu -3'
miRNA:   3'- -CCGCCgGGUG-------UGuGUGCCGCa---CUGCc -5'
15878 5' -59.4 NC_004065.1 + 102506 0.68 0.79436
Target:  5'- cGgGGCCCAUgaGCAgGCGGCagagGACGa -3'
miRNA:   3'- cCgCCGGGUG--UGUgUGCCGca--CUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.