miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 103779 0.7 0.7045
Target:  5'- gGGCGGCUCGaucccCGCACGgGCGUGAa-- -3'
miRNA:   3'- -CCGCCGGGUgu---GUGUGC-CGCACUgcc -5'
15878 5' -59.4 NC_004065.1 + 104126 0.66 0.878288
Target:  5'- cGGCcgGGCCUACA-GCACGGCG-GAg-- -3'
miRNA:   3'- -CCG--CCGGGUGUgUGUGCCGCaCUgcc -5'
15878 5' -59.4 NC_004065.1 + 104782 0.66 0.891246
Target:  5'- cGGCGGCCUcgagACGgGCAuCGaGCugGUGACGc -3'
miRNA:   3'- -CCGCCGGG----UGUgUGU-GC-CG--CACUGCc -5'
15878 5' -59.4 NC_004065.1 + 104880 0.69 0.768412
Target:  5'- uGCGGCUgauCGC-CACGCGGCuGggcGACGGc -3'
miRNA:   3'- cCGCCGG---GUGuGUGUGCCG-Ca--CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 104922 0.68 0.801928
Target:  5'- cGGCGGCguacacgcacuaCCGCAaccugcuguccauCACACGGUucGUGGCGcGg -3'
miRNA:   3'- -CCGCCG------------GGUGU-------------GUGUGCCG--CACUGC-C- -5'
15878 5' -59.4 NC_004065.1 + 105372 0.68 0.802762
Target:  5'- cGGCGGaCCCGgacuCGCugACGGCc-GGCGa -3'
miRNA:   3'- -CCGCC-GGGU----GUGugUGCCGcaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 105547 0.73 0.533724
Target:  5'- cGCGGCCCuggacccgGCGCagcgGCACGGCGcgccgucGGCGGg -3'
miRNA:   3'- cCGCCGGG--------UGUG----UGUGCCGCa------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 105848 0.78 0.301347
Target:  5'- cGGCGGCCUGCGCGCAcacccuggaguCGGUGuUGACGc -3'
miRNA:   3'- -CCGCCGGGUGUGUGU-----------GCCGC-ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 106341 0.68 0.819154
Target:  5'- gGGCGGCCCgGCGCugcuGCACGGgcagcgcgccaCGUG-CGa -3'
miRNA:   3'- -CCGCCGGG-UGUG----UGUGCC-----------GCACuGCc -5'
15878 5' -59.4 NC_004065.1 + 108788 0.69 0.723141
Target:  5'- uGGCGGCgUCGa--ACcUGGCGUGGCGGc -3'
miRNA:   3'- -CCGCCG-GGUgugUGuGCCGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 110592 0.66 0.884865
Target:  5'- cGGCGaccaCCACGCGCACGGggaugaagacCGUcaggauGACGGu -3'
miRNA:   3'- -CCGCcg--GGUGUGUGUGCC----------GCA------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 112301 0.67 0.842611
Target:  5'- cGGUGcGCgCGCGagagACGCGaGgGUGACGGg -3'
miRNA:   3'- -CCGC-CGgGUGUg---UGUGC-CgCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 112628 0.68 0.785829
Target:  5'- cGCGaGCCCAgCGCGCGCGGCcgaGCGu -3'
miRNA:   3'- cCGC-CGGGU-GUGUGUGCCGcacUGCc -5'
15878 5' -59.4 NC_004065.1 + 113916 0.68 0.817541
Target:  5'- gGGCGGagaUCGCGCgugucgacgACGCGGCGcucgggggcuggGACGGa -3'
miRNA:   3'- -CCGCCg--GGUGUG---------UGUGCCGCa-----------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 114021 0.68 0.802762
Target:  5'- aGCuGCCCccgcgGCGCACGuCGGCG-GACGa -3'
miRNA:   3'- cCGcCGGG-----UGUGUGU-GCCGCaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 115786 0.67 0.864562
Target:  5'- uGGCGGUCC-CGgGCACGGaaacuGCGGc -3'
miRNA:   3'- -CCGCCGGGuGUgUGUGCCgcac-UGCC- -5'
15878 5' -59.4 NC_004065.1 + 116883 0.66 0.897428
Target:  5'- uGGCGuGCCUGCugACGCuGGgGc-GCGGg -3'
miRNA:   3'- -CCGC-CGGGUGugUGUG-CCgCacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 117399 0.69 0.768412
Target:  5'- -uCGGCCgCGCGCGCugGGCuc-GCGGc -3'
miRNA:   3'- ccGCCGG-GUGUGUGugCCGcacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 118041 0.71 0.65709
Target:  5'- aGGCGGCCCccucgaGCGCcuucauCGCGGCcgGUGACu- -3'
miRNA:   3'- -CCGCCGGG------UGUGu-----GUGCCG--CACUGcc -5'
15878 5' -59.4 NC_004065.1 + 119188 0.75 0.411351
Target:  5'- gGGCGGCCCGCGCcccGCACuGGUGccUGGCa- -3'
miRNA:   3'- -CCGCCGGGUGUG---UGUG-CCGC--ACUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.