miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 230015 0.72 0.599685
Target:  5'- cGGgGGCCCGCGCGCACuca--GACGGc -3'
miRNA:   3'- -CCgCCGGGUGUGUGUGccgcaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 225048 0.66 0.884865
Target:  5'- uGaaGCCCGaGCGCACGuCGUGAUGGc -3'
miRNA:   3'- cCgcCGGGUgUGUGUGCcGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 222638 0.67 0.842611
Target:  5'- cGGuCGGCCCuuUACAUACucaccgcaGGUGUgGGCGGu -3'
miRNA:   3'- -CC-GCCGGGu-GUGUGUG--------CCGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 222180 0.66 0.878288
Target:  5'- uGCGGCCCu--C-CAUGGC-UGAUGGu -3'
miRNA:   3'- cCGCCGGGuguGuGUGCCGcACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 219847 0.66 0.878288
Target:  5'- cGGUGGCCUgucgggugACGgGCugGGauCGUGAUGa -3'
miRNA:   3'- -CCGCCGGG--------UGUgUGugCC--GCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 219625 0.66 0.890617
Target:  5'- uGGUGGUaaaaugaCCGCGCACACGcGCGagGuACGa -3'
miRNA:   3'- -CCGCCG-------GGUGUGUGUGC-CGCa-C-UGCc -5'
15878 5' -59.4 NC_004065.1 + 209566 0.69 0.750569
Target:  5'- aGGCccGGCCgGCuGCugGCgGGCGUG-CGGu -3'
miRNA:   3'- -CCG--CCGGgUG-UGugUG-CCGCACuGCC- -5'
15878 5' -59.4 NC_004065.1 + 208955 0.66 0.871519
Target:  5'- uGUccCCUACGgACACGGUGUGGCGa -3'
miRNA:   3'- cCGccGGGUGUgUGUGCCGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 207992 0.66 0.891246
Target:  5'- cGCGGCCUGC-C-CGgGGCcGUGGcCGGg -3'
miRNA:   3'- cCGCCGGGUGuGuGUgCCG-CACU-GCC- -5'
15878 5' -59.4 NC_004065.1 + 201486 0.67 0.857422
Target:  5'- uGCGGCgCA-GCAUGCGGCG-GGCGc -3'
miRNA:   3'- cCGCCGgGUgUGUGUGCCGCaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 200966 0.67 0.850103
Target:  5'- cGGCGGCuCCAgGau--CGGUgcgugGUGACGGg -3'
miRNA:   3'- -CCGCCG-GGUgUguguGCCG-----CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 200892 0.71 0.637954
Target:  5'- cGGCuGCCCGuCGCGCugGGCGac-CGGc -3'
miRNA:   3'- -CCGcCGGGU-GUGUGugCCGCacuGCC- -5'
15878 5' -59.4 NC_004065.1 + 200755 0.77 0.313938
Target:  5'- aGGCGGCUCACGCgucggucGCucucucgucgcGCGGCGgUGGCGGg -3'
miRNA:   3'- -CCGCCGGGUGUG-------UG-----------UGCCGC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 200522 0.68 0.784969
Target:  5'- -uCGGaucgCCGCGCACAgGGCGUccauggcgagggcGACGGg -3'
miRNA:   3'- ccGCCg---GGUGUGUGUgCCGCA-------------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 200319 0.66 0.871519
Target:  5'- gGGCGGCguCCGC-CGCucgacCGGCGaUGACa- -3'
miRNA:   3'- -CCGCCG--GGUGuGUGu----GCCGC-ACUGcc -5'
15878 5' -59.4 NC_004065.1 + 198026 0.66 0.884865
Target:  5'- aGGCGGUCgCGguCGC-CGGCGguuccaagggGAUGGa -3'
miRNA:   3'- -CCGCCGG-GUguGUGuGCCGCa---------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 197478 0.67 0.82713
Target:  5'- cGGCGGa-UAC-CGC-CGGCGcGACGGg -3'
miRNA:   3'- -CCGCCggGUGuGUGuGCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 196363 0.68 0.777177
Target:  5'- aGCGGCCCucCcCGCGCGcCG-GACGGu -3'
miRNA:   3'- cCGCCGGGu-GuGUGUGCcGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 196176 0.73 0.506214
Target:  5'- -cCGGCCUuucucuucaugGCGCGCACGGCGUgguuGAUGGc -3'
miRNA:   3'- ccGCCGGG-----------UGUGUGUGCCGCA----CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 196104 0.69 0.750569
Target:  5'- cGCGGCUCGC-CACcgccaACGGCGgguACGGc -3'
miRNA:   3'- cCGCCGGGUGuGUG-----UGCCGCac-UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.