miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 195578 0.73 0.524491
Target:  5'- uGCGuGCCCACGCu--CGG-GUGACGGc -3'
miRNA:   3'- cCGC-CGGGUGUGuguGCCgCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 195026 0.69 0.748764
Target:  5'- aGCGGCCgCGCucguccaugaccaggGCGCACGGCGUcucucugaagugcagGuCGGg -3'
miRNA:   3'- cCGCCGG-GUG---------------UGUGUGCCGCA---------------CuGCC- -5'
15878 5' -59.4 NC_004065.1 + 194828 0.65 0.901635
Target:  5'- cGGUGGCCgC-CACGuucuccaggccgacCACGGCG--GCGGa -3'
miRNA:   3'- -CCGCCGG-GuGUGU--------------GUGCCGCacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 191554 0.75 0.39531
Target:  5'- gGGCGGCUCACucuuccGCACGCGuGCgGUGAuCGGc -3'
miRNA:   3'- -CCGCCGGGUG------UGUGUGC-CG-CACU-GCC- -5'
15878 5' -59.4 NC_004065.1 + 188985 0.69 0.750569
Target:  5'- cGCGGCCCGaGCucuGCGGCuucGACGGa -3'
miRNA:   3'- cCGCCGGGUgUGug-UGCCGca-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 188652 0.66 0.878288
Target:  5'- cGauGUCCGCucgaggGCGCGCGGCGggagacGACGGu -3'
miRNA:   3'- cCgcCGGGUG------UGUGUGCCGCa-----CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 187989 0.71 0.628377
Target:  5'- uGCGGCCgCGCGCaACAUGGCuc-GCGGa -3'
miRNA:   3'- cCGCCGG-GUGUG-UGUGCCGcacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 187662 0.72 0.57118
Target:  5'- cGGCggGGUCCACGgGCACGaGCcUGAUGGu -3'
miRNA:   3'- -CCG--CCGGGUGUgUGUGC-CGcACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 187391 0.68 0.79436
Target:  5'- aGCuGGCgCGCG-GCGCGGUGUGGCGu -3'
miRNA:   3'- cCG-CCGgGUGUgUGUGCCGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 186549 0.67 0.82713
Target:  5'- cGGCGGCgCCGaggACACgugcuGCGGCG-GAUGa -3'
miRNA:   3'- -CCGCCG-GGUg--UGUG-----UGCCGCaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 184483 0.66 0.891246
Target:  5'- gGGCGGCugCCGC-CGCcgccGCGGCGccgggUGGCGu -3'
miRNA:   3'- -CCGCCG--GGUGuGUG----UGCCGC-----ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 184198 0.77 0.334619
Target:  5'- cGGcCGGUCCGauacaugcccaccCGCACGCGGCGUGugGc -3'
miRNA:   3'- -CC-GCCGGGU-------------GUGUGUGCCGCACugCc -5'
15878 5' -59.4 NC_004065.1 + 183906 0.67 0.82634
Target:  5'- aGGU-GCgCCACGCugAUGGUGUaacagauGACGGg -3'
miRNA:   3'- -CCGcCG-GGUGUGugUGCCGCA-------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 182561 0.66 0.891246
Target:  5'- uGGCGGCUguUccaAUAUGGCG-GAUGGg -3'
miRNA:   3'- -CCGCCGGguGug-UGUGCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 176235 0.66 0.878288
Target:  5'- cGGCGGaCCGCGCagaccuGCugGGCuc-GCGGa -3'
miRNA:   3'- -CCGCCgGGUGUG------UGugCCGcacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 173872 0.66 0.871519
Target:  5'- aGGC-GCCguCACGC-CGuGUGUGugGGc -3'
miRNA:   3'- -CCGcCGGguGUGUGuGC-CGCACugCC- -5'
15878 5' -59.4 NC_004065.1 + 172862 0.66 0.897428
Target:  5'- uGUcGUCUACGCuCGuuucCGGCGUGACGGc -3'
miRNA:   3'- cCGcCGGGUGUGuGU----GCCGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 172108 0.67 0.857422
Target:  5'- aGGCGGCUCugAC-CGCGGUGgcuACu- -3'
miRNA:   3'- -CCGCCGGGugUGuGUGCCGCac-UGcc -5'
15878 5' -59.4 NC_004065.1 + 171702 0.68 0.777177
Target:  5'- aGCuGGCCUGCACGC-UGcGCGUcauGACGGa -3'
miRNA:   3'- cCG-CCGGGUGUGUGuGC-CGCA---CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 168618 0.66 0.871519
Target:  5'- aGCGGCUgCugGCGCugGugccGCG-GGCGGa -3'
miRNA:   3'- cCGCCGG-GugUGUGugC----CGCaCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.