miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 168162 0.67 0.834952
Target:  5'- aGCaGGCCCuucCGCGCGgGGCGcGACa- -3'
miRNA:   3'- cCG-CCGGGu--GUGUGUgCCGCaCUGcc -5'
15878 5' -59.4 NC_004065.1 + 166524 0.67 0.864562
Target:  5'- gGGCGaGgCCAUccgcaccuggcuGCGCgACGGCGccUGGCGGc -3'
miRNA:   3'- -CCGC-CgGGUG------------UGUG-UGCCGC--ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 166165 0.67 0.864562
Target:  5'- uGGUGGUCCuuCGCgaACGCGGCcaUGGCGa -3'
miRNA:   3'- -CCGCCGGGu-GUG--UGUGCCGc-ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 165885 0.67 0.842611
Target:  5'- aGGCGaGgCCGCACGCGCuGCcgucGUGguACGGa -3'
miRNA:   3'- -CCGC-CgGGUGUGUGUGcCG----CAC--UGCC- -5'
15878 5' -59.4 NC_004065.1 + 164764 0.67 0.857422
Target:  5'- --aGGCCCAgACcuCACGGag-GACGGg -3'
miRNA:   3'- ccgCCGGGUgUGu-GUGCCgcaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 163010 0.66 0.897428
Target:  5'- uGGCuGCCCGCGCggggcccguACACGgGCGccGACuGGu -3'
miRNA:   3'- -CCGcCGGGUGUG---------UGUGC-CGCa-CUG-CC- -5'
15878 5' -59.4 NC_004065.1 + 162902 0.68 0.777177
Target:  5'- aGGCGcGCgCCGCuguccaGCACGGCGUccagcGACGu -3'
miRNA:   3'- -CCGC-CG-GGUGug----UGUGCCGCA-----CUGCc -5'
15878 5' -59.4 NC_004065.1 + 161997 0.66 0.897428
Target:  5'- uGGCGGCCCACGucCACGaaguacugcCGGUagaACGGc -3'
miRNA:   3'- -CCGCCGGGUGU--GUGU---------GCCGcacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 161803 0.66 0.878288
Target:  5'- cGGgGGCUgGauggGCGCAUGGaCGgacgGACGGg -3'
miRNA:   3'- -CCgCCGGgUg---UGUGUGCC-GCa---CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 157955 0.7 0.666636
Target:  5'- gGGUGGCguCCACcgGCugGGuCGUGAUGGc -3'
miRNA:   3'- -CCGCCG--GGUGugUGugCC-GCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 153624 0.72 0.556107
Target:  5'- gGGCGGCgCCACuCGgACGGCGgcgagcucauccgcGGCGGc -3'
miRNA:   3'- -CCGCCG-GGUGuGUgUGCCGCa-------------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 151365 0.72 0.579703
Target:  5'- cGCGGCgCCggccgcuGCGCugGCGGCcgaucucuuggGUGGCGGa -3'
miRNA:   3'- cCGCCG-GG-------UGUGugUGCCG-----------CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 149648 0.66 0.891246
Target:  5'- cGGCaGGCCCuGCACGCGCcgcagcGCGUuGACc- -3'
miRNA:   3'- -CCG-CCGGG-UGUGUGUGc-----CGCA-CUGcc -5'
15878 5' -59.4 NC_004065.1 + 148850 0.66 0.871519
Target:  5'- aGGCGG-CCGC-CGCGaucgaggaGGCGgcGGCGGg -3'
miRNA:   3'- -CCGCCgGGUGuGUGUg-------CCGCa-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 146872 0.69 0.741508
Target:  5'- cGGCGcGUgaACGCGgGCGGCaGUGACGa -3'
miRNA:   3'- -CCGC-CGggUGUGUgUGCCG-CACUGCc -5'
15878 5' -59.4 NC_004065.1 + 146543 0.69 0.741508
Target:  5'- uGGuCGGCCUGCccgACAUcguCGGCGUcGCGGg -3'
miRNA:   3'- -CC-GCCGGGUG---UGUGu--GCCGCAcUGCC- -5'
15878 5' -59.4 NC_004065.1 + 142479 0.68 0.777177
Target:  5'- gGGCGGUggACGCGagcCAgGGgGUGGCGGu -3'
miRNA:   3'- -CCGCCGggUGUGU---GUgCCgCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 141633 0.71 0.609236
Target:  5'- uGGCGGCUCgGCgACGgAgGGCGgUGGCGGu -3'
miRNA:   3'- -CCGCCGGG-UG-UGUgUgCCGC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 140442 0.7 0.695096
Target:  5'- cGCGGCUguUGC-CGCGGCcgaaguaagGUGACGGg -3'
miRNA:   3'- cCGCCGGguGUGuGUGCCG---------CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 138821 0.7 0.694153
Target:  5'- cGGCGGCgccgaugCCGCGCACgccgACGGCGcuuccGCGGc -3'
miRNA:   3'- -CCGCCG-------GGUGUGUG----UGCCGCac---UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.