miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 137830 0.66 0.891246
Target:  5'- cGCGGCCCGCGuCucguuuCGCGuGUGUGuuuugugggacACGGu -3'
miRNA:   3'- cCGCCGGGUGU-Gu-----GUGC-CGCAC-----------UGCC- -5'
15878 5' -59.4 NC_004065.1 + 136635 0.67 0.842611
Target:  5'- cGGCGGUCCGgA---GCGGCGUGGauccUGGu -3'
miRNA:   3'- -CCGCCGGGUgUgugUGCCGCACU----GCC- -5'
15878 5' -59.4 NC_004065.1 + 135574 0.69 0.73603
Target:  5'- aGGCGGCCgucaccuccuucgaaCACACGCGCcGCuGggaGACGGc -3'
miRNA:   3'- -CCGCCGG---------------GUGUGUGUGcCG-Ca--CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 134839 0.65 0.901635
Target:  5'- cGGCcucccccggagacgGGCCCugGacccuGCACGGCGgcggcGACGa -3'
miRNA:   3'- -CCG--------------CCGGGugUg----UGUGCCGCa----CUGCc -5'
15878 5' -59.4 NC_004065.1 + 134161 0.74 0.470521
Target:  5'- uGGUGGUCCACACGCaggACGGCuccGUcugcaucaaGACGGg -3'
miRNA:   3'- -CCGCCGGGUGUGUG---UGCCG---CA---------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 133984 0.76 0.349679
Target:  5'- cGGCGGCCggggcccgugccCACGCACGCGG-G-GGCGGu -3'
miRNA:   3'- -CCGCCGG------------GUGUGUGUGCCgCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 133055 0.73 0.533724
Target:  5'- cGGaCGGCCgGCGCagcagGCGCGGCagcaGACGGg -3'
miRNA:   3'- -CC-GCCGGgUGUG-----UGUGCCGca--CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 132826 0.73 0.497178
Target:  5'- aGGCuGGCCUACAgGCGCaGCGcGACGa -3'
miRNA:   3'- -CCG-CCGGGUGUgUGUGcCGCaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 131414 0.67 0.842611
Target:  5'- aGGCGGCgaaaCCAUGCuGCGgacCGGCGUcaagaGACGGc -3'
miRNA:   3'- -CCGCCG----GGUGUG-UGU---GCCGCA-----CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 131316 0.67 0.864562
Target:  5'- aGGUGGUCgAgAaGCugGGCGUccccauGACGGg -3'
miRNA:   3'- -CCGCCGGgUgUgUGugCCGCA------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 130647 0.66 0.871519
Target:  5'- aGGCaGCCCACGCccgucaugcccaACGuCGGCaUGAuCGGc -3'
miRNA:   3'- -CCGcCGGGUGUG------------UGU-GCCGcACU-GCC- -5'
15878 5' -59.4 NC_004065.1 + 130475 0.68 0.785829
Target:  5'- -aCGGCCgucCGC-CGCGGCGaGACGGg -3'
miRNA:   3'- ccGCCGGgu-GUGuGUGCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 130058 0.75 0.40328
Target:  5'- cGCGGCCCgaGCACGcCGCGGCG-GugGu -3'
miRNA:   3'- cCGCCGGG--UGUGU-GUGCCGCaCugCc -5'
15878 5' -59.4 NC_004065.1 + 129898 0.69 0.741508
Target:  5'- cGGCGGaCCCugAU-CGgGGCcUGGCGGc -3'
miRNA:   3'- -CCGCC-GGGugUGuGUgCCGcACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 128588 0.71 0.617844
Target:  5'- cGGCGGCgaaggcgcauCCGCACGCgccagccgcccccACGGuCGuUGGCGGa -3'
miRNA:   3'- -CCGCCG----------GGUGUGUG-------------UGCC-GC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 128424 0.7 0.666636
Target:  5'- cGGCGGCgCCGcCACcgagucugaGCGCGGCGgaGGCGu -3'
miRNA:   3'- -CCGCCG-GGU-GUG---------UGUGCCGCa-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 127223 0.68 0.777177
Target:  5'- cGGCGGCCgCGaggauCGgGCGCGGU--GGCGGg -3'
miRNA:   3'- -CCGCCGG-GU-----GUgUGUGCCGcaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 125444 0.69 0.768412
Target:  5'- gGGCaGGuuaCCCACcaugAUGCGCGGCGUGcacaGCGGc -3'
miRNA:   3'- -CCG-CC---GGGUG----UGUGUGCCGCAC----UGCC- -5'
15878 5' -59.4 NC_004065.1 + 125065 0.7 0.685646
Target:  5'- cGCaGGUCCGCGC-CACGaaccGUGUGAUGGa -3'
miRNA:   3'- cCG-CCGGGUGUGuGUGC----CGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 124723 0.69 0.732363
Target:  5'- aGGUucaGGCCCGCGcCGCACG-CGUGguguucagcacgGCGGg -3'
miRNA:   3'- -CCG---CCGGGUGU-GUGUGCcGCAC------------UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.