miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 24829 0.71 0.647528
Target:  5'- gGGUGGUggagACGCACGCGGCGcccgauguUGGCGGc -3'
miRNA:   3'- -CCGCCGgg--UGUGUGUGCCGC--------ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 68652 0.71 0.637954
Target:  5'- aGGCGGCCgaggcgUACGCGCAguCGGCGU-ACGa -3'
miRNA:   3'- -CCGCCGG------GUGUGUGU--GCCGCAcUGCc -5'
15878 5' -59.4 NC_004065.1 + 45804 0.72 0.552356
Target:  5'- gGGCuGGCgCCACACGcCGCGuGCGgGugGGc -3'
miRNA:   3'- -CCG-CCG-GGUGUGU-GUGC-CGCaCugCC- -5'
15878 5' -59.4 NC_004065.1 + 196176 0.73 0.506214
Target:  5'- -cCGGCCUuucucuucaugGCGCGCACGGCGUgguuGAUGGc -3'
miRNA:   3'- ccGCCGGG-----------UGUGUGUGCCGCA----CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 46170 0.74 0.470521
Target:  5'- cGGCcacGGCCaaACACGCgACGGCGUGGgGGc -3'
miRNA:   3'- -CCG---CCGGg-UGUGUG-UGCCGCACUgCC- -5'
15878 5' -59.4 NC_004065.1 + 134161 0.74 0.470521
Target:  5'- uGGUGGUCCACACGCaggACGGCuccGUcugcaucaaGACGGg -3'
miRNA:   3'- -CCGCCGGGUGUGUG---UGCCG---CA---------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 67749 0.75 0.427791
Target:  5'- aGCGGCgCCGCGuCcgACGGCGUGACGa -3'
miRNA:   3'- cCGCCG-GGUGU-GugUGCCGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 191554 0.75 0.39531
Target:  5'- gGGCGGCUCACucuuccGCACGCGuGCgGUGAuCGGc -3'
miRNA:   3'- -CCGCCGGGUG------UGUGUGC-CG-CACU-GCC- -5'
15878 5' -59.4 NC_004065.1 + 22077 0.76 0.369741
Target:  5'- cGGCGGCCCAaccCGCGCGCuccgaagaucauauGcGCGUcGACGGg -3'
miRNA:   3'- -CCGCCGGGU---GUGUGUG--------------C-CGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 133984 0.76 0.349679
Target:  5'- cGGCGGCCggggcccgugccCACGCACGCGG-G-GGCGGu -3'
miRNA:   3'- -CCGCCGG------------GUGUGUGUGCCgCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 88158 0.72 0.560806
Target:  5'- gGGC-GCCCGCuCGCcggacgaGCGGCG-GACGGg -3'
miRNA:   3'- -CCGcCGGGUGuGUG-------UGCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 77205 0.72 0.561747
Target:  5'- cGGCGGCgCC-C-CGCACGGCGaUGGCc- -3'
miRNA:   3'- -CCGCCG-GGuGuGUGUGCCGC-ACUGcc -5'
15878 5' -59.4 NC_004065.1 + 30123 0.71 0.628377
Target:  5'- cGGCGGCCUGgGgaGgGCGG-GUGGCGGa -3'
miRNA:   3'- -CCGCCGGGUgUg-UgUGCCgCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 187989 0.71 0.628377
Target:  5'- uGCGGCCgCGCGCaACAUGGCuc-GCGGa -3'
miRNA:   3'- cCGCCGG-GUGUG-UGUGCCGcacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 46059 0.71 0.618802
Target:  5'- uGGCGGUCCGCGucaaACACaGGC-UGACGa -3'
miRNA:   3'- -CCGCCGGGUGUg---UGUG-CCGcACUGCc -5'
15878 5' -59.4 NC_004065.1 + 128588 0.71 0.617844
Target:  5'- cGGCGGCgaaggcgcauCCGCACGCgccagccgcccccACGGuCGuUGGCGGa -3'
miRNA:   3'- -CCGCCG----------GGUGUGUG-------------UGCC-GC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 35572 0.72 0.589203
Target:  5'- aGGCGG-CCACAgGCGgaaucggUGGCGUcGGCGGu -3'
miRNA:   3'- -CCGCCgGGUGUgUGU-------GCCGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 38755 0.72 0.580651
Target:  5'- cGGCGuGCCCGCGaguaccguuucCACACcgGGC-UGACGGu -3'
miRNA:   3'- -CCGC-CGGGUGU-----------GUGUG--CCGcACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 98265 0.72 0.57118
Target:  5'- cGGCGGCCCuggGCGCGCGCcucGCG-GAucCGGa -3'
miRNA:   3'- -CCGCCGGG---UGUGUGUGc--CGCaCU--GCC- -5'
15878 5' -59.4 NC_004065.1 + 187662 0.72 0.57118
Target:  5'- cGGCggGGUCCACGgGCACGaGCcUGAUGGu -3'
miRNA:   3'- -CCG--CCGGGUGUgUGUGC-CGcACUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.