miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 134161 0.74 0.470521
Target:  5'- uGGUGGUCCACACGCaggACGGCuccGUcugcaucaaGACGGg -3'
miRNA:   3'- -CCGCCGGGUGUGUG---UGCCG---CA---------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 67749 0.75 0.427791
Target:  5'- aGCGGCgCCGCGuCcgACGGCGUGACGa -3'
miRNA:   3'- cCGCCG-GGUGU-GugUGCCGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 191554 0.75 0.39531
Target:  5'- gGGCGGCUCACucuuccGCACGCGuGCgGUGAuCGGc -3'
miRNA:   3'- -CCGCCGGGUG------UGUGUGC-CG-CACU-GCC- -5'
15878 5' -59.4 NC_004065.1 + 22077 0.76 0.369741
Target:  5'- cGGCGGCCCAaccCGCGCGCuccgaagaucauauGcGCGUcGACGGg -3'
miRNA:   3'- -CCGCCGGGU---GUGUGUG--------------C-CGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 133984 0.76 0.349679
Target:  5'- cGGCGGCCggggcccgugccCACGCACGCGG-G-GGCGGu -3'
miRNA:   3'- -CCGCCGG------------GUGUGUGUGCCgCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 35572 0.72 0.589203
Target:  5'- aGGCGG-CCACAgGCGgaaucggUGGCGUcGGCGGu -3'
miRNA:   3'- -CCGCCgGGUGUgUGU-------GCCGCA-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 128588 0.71 0.617844
Target:  5'- cGGCGGCgaaggcgcauCCGCACGCgccagccgcccccACGGuCGuUGGCGGa -3'
miRNA:   3'- -CCGCCG----------GGUGUGUG-------------UGCC-GC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 92522 0.7 0.695096
Target:  5'- cGGUGcCUCGCGCGCGCguacgGGCG-GGCGGg -3'
miRNA:   3'- -CCGCcGGGUGUGUGUG-----CCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 59716 0.7 0.695096
Target:  5'- aGCGGCC-GCgGCGCACGGCGaccgucGCGGa -3'
miRNA:   3'- cCGCCGGgUG-UGUGUGCCGCac----UGCC- -5'
15878 5' -59.4 NC_004065.1 + 125 0.7 0.694153
Target:  5'- aGGUGGCUgCGCGCACgucaccgAgGGCGUGGCa- -3'
miRNA:   3'- -CCGCCGG-GUGUGUG-------UgCCGCACUGcc -5'
15878 5' -59.4 NC_004065.1 + 125065 0.7 0.685646
Target:  5'- cGCaGGUCCGCGC-CACGaaccGUGUGAUGGa -3'
miRNA:   3'- cCG-CCGGGUGUGuGUGC----CGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 43147 0.7 0.685646
Target:  5'- cGCGGaagaCACGCGCACGGac-GGCGGg -3'
miRNA:   3'- cCGCCgg--GUGUGUGUGCCgcaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 31089 0.7 0.676156
Target:  5'- cGGCGGCCUugGCcgcCAgGGUGgaGCGGg -3'
miRNA:   3'- -CCGCCGGGugUGu--GUgCCGCacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 128424 0.7 0.666636
Target:  5'- cGGCGGCgCCGcCACcgagucugaGCGCGGCGgaGGCGu -3'
miRNA:   3'- -CCGCCG-GGU-GUG---------UGUGCCGCa-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 47844 0.71 0.65709
Target:  5'- aGCGGCCCuCAugaugUugGCGGCGUcguaGugGGa -3'
miRNA:   3'- cCGCCGGGuGU-----GugUGCCGCA----CugCC- -5'
15878 5' -59.4 NC_004065.1 + 24829 0.71 0.647528
Target:  5'- gGGUGGUggagACGCACGCGGCGcccgauguUGGCGGc -3'
miRNA:   3'- -CCGCCGgg--UGUGUGUGCCGC--------ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 68652 0.71 0.637954
Target:  5'- aGGCGGCCgaggcgUACGCGCAguCGGCGU-ACGa -3'
miRNA:   3'- -CCGCCGG------GUGUGUGU--GCCGCAcUGCc -5'
15878 5' -59.4 NC_004065.1 + 30123 0.71 0.628377
Target:  5'- cGGCGGCCUGgGgaGgGCGG-GUGGCGGa -3'
miRNA:   3'- -CCGCCGGGUgUg-UgUGCCgCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 187989 0.71 0.628377
Target:  5'- uGCGGCCgCGCGCaACAUGGCuc-GCGGa -3'
miRNA:   3'- cCGCCGG-GUGUG-UGUGCCGcacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 46059 0.71 0.618802
Target:  5'- uGGCGGUCCGCGucaaACACaGGC-UGACGa -3'
miRNA:   3'- -CCGCCGGGUGUg---UGUG-CCGcACUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.