Results 61 - 80 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 68652 | 0.71 | 0.637954 |
Target: 5'- aGGCGGCCgaggcgUACGCGCAguCGGCGU-ACGa -3' miRNA: 3'- -CCGCCGG------GUGUGUGU--GCCGCAcUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 24829 | 0.71 | 0.647528 |
Target: 5'- gGGUGGUggagACGCACGCGGCGcccgauguUGGCGGc -3' miRNA: 3'- -CCGCCGgg--UGUGUGUGCCGC--------ACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 124723 | 0.69 | 0.732363 |
Target: 5'- aGGUucaGGCCCGCGcCGCACG-CGUGguguucagcacgGCGGg -3' miRNA: 3'- -CCG---CCGGGUGU-GUGUGCcGCAC------------UGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 135574 | 0.69 | 0.73603 |
Target: 5'- aGGCGGCCgucaccuccuucgaaCACACGCGCcGCuGggaGACGGc -3' miRNA: 3'- -CCGCCGG---------------GUGUGUGUGcCG-Ca--CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 146543 | 0.69 | 0.741508 |
Target: 5'- uGGuCGGCCUGCccgACAUcguCGGCGUcGCGGg -3' miRNA: 3'- -CC-GCCGGGUG---UGUGu--GCCGCAcUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 82519 | 0.69 | 0.741508 |
Target: 5'- cGGUGGCCCcgaACAUGCGGa-UGACGu -3' miRNA: 3'- -CCGCCGGGug-UGUGUGCCgcACUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 99543 | 0.69 | 0.741508 |
Target: 5'- cGGCGcuCCCGucuCGC-CGCGGCG-GACGGc -3' miRNA: 3'- -CCGCc-GGGU---GUGuGUGCCGCaCUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 195026 | 0.69 | 0.748764 |
Target: 5'- aGCGGCCgCGCucguccaugaccaggGCGCACGGCGUcucucugaagugcagGuCGGg -3' miRNA: 3'- cCGCCGG-GUG---------------UGUGUGCCGCA---------------CuGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 79244 | 0.69 | 0.750569 |
Target: 5'- aGCGGaUCACGCugACGGCGcGAUGu -3' miRNA: 3'- cCGCCgGGUGUGugUGCCGCaCUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 45521 | 0.69 | 0.75954 |
Target: 5'- cGGaCGGUCUACGcCACcCGGCGccgcGGCGGc -3' miRNA: 3'- -CC-GCCGGGUGU-GUGuGCCGCa---CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 66626 | 0.7 | 0.713851 |
Target: 5'- cGCGGgCUGCG-GCGCuGCGUGGCGGa -3' miRNA: 3'- cCGCCgGGUGUgUGUGcCGCACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 140442 | 0.7 | 0.695096 |
Target: 5'- cGCGGCUguUGC-CGCGGCcgaaguaagGUGACGGg -3' miRNA: 3'- cCGCCGGguGUGuGUGCCG---------CACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 47844 | 0.71 | 0.65709 |
Target: 5'- aGCGGCCCuCAugaugUugGCGGCGUcguaGugGGa -3' miRNA: 3'- cCGCCGGGuGU-----GugUGCCGCA----CugCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 128424 | 0.7 | 0.666636 |
Target: 5'- cGGCGGCgCCGcCACcgagucugaGCGCGGCGgaGGCGu -3' miRNA: 3'- -CCGCCG-GGU-GUG---------UGUGCCGCa-CUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 31089 | 0.7 | 0.676156 |
Target: 5'- cGGCGGCCUugGCcgcCAgGGUGgaGCGGg -3' miRNA: 3'- -CCGCCGGGugUGu--GUgCCGCacUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 43147 | 0.7 | 0.685646 |
Target: 5'- cGCGGaagaCACGCGCACGGac-GGCGGg -3' miRNA: 3'- cCGCCgg--GUGUGUGUGCCgcaCUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 125065 | 0.7 | 0.685646 |
Target: 5'- cGCaGGUCCGCGC-CACGaaccGUGUGAUGGa -3' miRNA: 3'- cCG-CCGGGUGUGuGUGC----CGCACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 125 | 0.7 | 0.694153 |
Target: 5'- aGGUGGCUgCGCGCACgucaccgAgGGCGUGGCa- -3' miRNA: 3'- -CCGCCGG-GUGUGUG-------UgCCGCACUGcc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 59716 | 0.7 | 0.695096 |
Target: 5'- aGCGGCC-GCgGCGCACGGCGaccgucGCGGa -3' miRNA: 3'- cCGCCGGgUG-UGUGUGCCGCac----UGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 92522 | 0.7 | 0.695096 |
Target: 5'- cGGUGcCUCGCGCGCGCguacgGGCG-GGCGGg -3' miRNA: 3'- -CCGCcGGGUGUGUGUG-----CCGCaCUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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