miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 99543 0.69 0.741508
Target:  5'- cGGCGcuCCCGucuCGC-CGCGGCG-GACGGc -3'
miRNA:   3'- -CCGCc-GGGU---GUGuGUGCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 82519 0.69 0.741508
Target:  5'- cGGUGGCCCcgaACAUGCGGa-UGACGu -3'
miRNA:   3'- -CCGCCGGGug-UGUGUGCCgcACUGCc -5'
15878 5' -59.4 NC_004065.1 + 43147 0.7 0.685646
Target:  5'- cGCGGaagaCACGCGCACGGac-GGCGGg -3'
miRNA:   3'- cCGCCgg--GUGUGUGUGCCgcaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 125065 0.7 0.685646
Target:  5'- cGCaGGUCCGCGC-CACGaaccGUGUGAUGGa -3'
miRNA:   3'- cCG-CCGGGUGUGuGUGC----CGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 125 0.7 0.694153
Target:  5'- aGGUGGCUgCGCGCACgucaccgAgGGCGUGGCa- -3'
miRNA:   3'- -CCGCCGG-GUGUGUG-------UgCCGCACUGcc -5'
15878 5' -59.4 NC_004065.1 + 59716 0.7 0.695096
Target:  5'- aGCGGCC-GCgGCGCACGGCGaccgucGCGGa -3'
miRNA:   3'- cCGCCGGgUG-UGUGUGCCGCac----UGCC- -5'
15878 5' -59.4 NC_004065.1 + 92522 0.7 0.695096
Target:  5'- cGGUGcCUCGCGCGCGCguacgGGCG-GGCGGg -3'
miRNA:   3'- -CCGCcGGGUGUGUGUG-----CCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 140442 0.7 0.695096
Target:  5'- cGCGGCUguUGC-CGCGGCcgaaguaagGUGACGGg -3'
miRNA:   3'- cCGCCGGguGUGuGUGCCG---------CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 66626 0.7 0.713851
Target:  5'- cGCGGgCUGCG-GCGCuGCGUGGCGGa -3'
miRNA:   3'- cCGCCgGGUGUgUGUGcCGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 124723 0.69 0.732363
Target:  5'- aGGUucaGGCCCGCGcCGCACG-CGUGguguucagcacgGCGGg -3'
miRNA:   3'- -CCG---CCGGGUGU-GUGUGCcGCAC------------UGCC- -5'
15878 5' -59.4 NC_004065.1 + 135574 0.69 0.73603
Target:  5'- aGGCGGCCgucaccuccuucgaaCACACGCGCcGCuGggaGACGGc -3'
miRNA:   3'- -CCGCCGG---------------GUGUGUGUGcCG-Ca--CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 146543 0.69 0.741508
Target:  5'- uGGuCGGCCUGCccgACAUcguCGGCGUcGCGGg -3'
miRNA:   3'- -CC-GCCGGGUG---UGUGu--GCCGCAcUGCC- -5'
15878 5' -59.4 NC_004065.1 + 195578 0.73 0.524491
Target:  5'- uGCGuGCCCACGCu--CGG-GUGACGGc -3'
miRNA:   3'- cCGC-CGGGUGUGuguGCCgCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 132826 0.73 0.497178
Target:  5'- aGGCuGGCCUACAgGCGCaGCGcGACGa -3'
miRNA:   3'- -CCG-CCGGGUGUgUGUGcCGCaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 119188 0.75 0.411351
Target:  5'- gGGCGGCCCGCGCcccGCACuGGUGccUGGCa- -3'
miRNA:   3'- -CCGCCGGGUGUG---UGUG-CCGC--ACUGcc -5'
15878 5' -59.4 NC_004065.1 + 130058 0.75 0.40328
Target:  5'- cGCGGCCCgaGCACGcCGCGGCG-GugGu -3'
miRNA:   3'- cCGCCGGG--UGUGU-GUGCCGCaCugCc -5'
15878 5' -59.4 NC_004065.1 + 90025 0.76 0.363715
Target:  5'- cGGCGGCgucagcuCCACGCuCAUGGCGacGGCGGg -3'
miRNA:   3'- -CCGCCG-------GGUGUGuGUGCCGCa-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 184198 0.77 0.334619
Target:  5'- cGGcCGGUCCGauacaugcccaccCGCACGCGGCGUGugGc -3'
miRNA:   3'- -CC-GCCGGGU-------------GUGUGUGCCGCACugCc -5'
15878 5' -59.4 NC_004065.1 + 105848 0.78 0.301347
Target:  5'- cGGCGGCCUGCGCGCAcacccuggaguCGGUGuUGACGc -3'
miRNA:   3'- -CCGCCGGGUGUGUGU-----------GCCGC-ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 120422 0.66 0.897428
Target:  5'- cGCGGCCCGgGggucgaGCGCGGCcUGAUa- -3'
miRNA:   3'- cCGCCGGGUgUg-----UGUGCCGcACUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.